PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03614.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 1025aa    MW: 114691 Da    PI: 8.2241
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03614.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.6e-066384223
                             EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                             +C+ Cg sF+ + +Lk+H+ +H
  mrna03614.1-v1.0-hybrid 63 TCEECGASFNKPAYLKQHMISH 84
                             7******************999 PP
2zf-C2H214.97.8e-05127151123
                              EEET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                              y+C+  dC   ++rk++L+rH+  H
  mrna03614.1-v1.0-hybrid 127 YVCTidDCRSAYRRKDHLNRHLLQH 151
                              99*******************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-61884No hitNo description
SMARTSM00355352043IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.8912048IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.8E-55985IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0126284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6996289IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-6115153No hitNo description
Gene3DG3DSA:3.30.160.604.2E-9123153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.681127156IPR007087Zinc finger, C2H2
SMARTSM003550.01127151IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129151IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723156186IPR007087Zinc finger, C2H2
SMARTSM003550.47156181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-5192213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035595196220IPR015880Zinc finger, C2H2-like
SMARTSM003552.4228253IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280230253IPR007087Zinc finger, C2H2
SMARTSM0035536256277IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.177286316IPR007087Zinc finger, C2H2
SMARTSM003550.022286311IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280288311IPR007087Zinc finger, C2H2
SuperFamilySSF576677.06E-6296339No hitNo description
Gene3DG3DSA:3.30.160.605.9E-5310339IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.725317348IPR007087Zinc finger, C2H2
SMARTSM003555.6317343IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280319343IPR007087Zinc finger, C2H2
SuperFamilySSF514451.05E-120427807IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.3001.1E-118428785IPR001764Glycoside hydrolase, family 3, N-terminal
PfamPF009334.8E-67448771IPR001764Glycoside hydrolase, family 3, N-terminal
PRINTSPR001331.0E-16509525IPR001764Glycoside hydrolase, family 3, N-terminal
PRINTSPR001331.0E-16574590IPR001764Glycoside hydrolase, family 3, N-terminal
PRINTSPR001331.0E-16620636IPR001764Glycoside hydrolase, family 3, N-terminal
PRINTSPR001331.0E-16690708IPR001764Glycoside hydrolase, family 3, N-terminal
Gene3DG3DSA:3.40.50.17003.0E-657941017IPR002772Glycoside hydrolase family 3 C-terminal domain
SuperFamilySSF522791.31E-578081017IPR002772Glycoside hydrolase family 3 C-terminal domain
PfamPF019151.1E-348081017IPR002772Glycoside hydrolase family 3 C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0003676Molecular Functionnucleic acid binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 1025 aa     Download sequence    Send to blast
MEKGEAEEKK RPIFRDIRRY YCEYCGNCRS KKSLIASHIL AQHKDEMERD EGDEEVEVEK  60
CNTCEECGAS FNKPAYLKQH MISHSLEHWI PPKNSKMREG TDLNGPVPGG RPPVKLHQVT  120
LNHTRPYVCT IDDCRSAYRR KDHLNRHLLQ HQGKLFKCPI ENCKSEFAFQ GNVKRHVVEL  180
HSENCPSISV EGQKQHVCQE PGCGKVFQFA SKLWKYEDSH VKLDSVEAFC SEPDCMKYFS  240
NKQCLQDHIQ SCHTHITCEI CGNKEWKKNI RTHLHAHEEG VSSLEIKCEY EGCLHTFTKK  300
LNLLQHVKAV HLQQKPFSCS FSGCSKTFSY KHVRDKHEKS GCHGDFEEAD EQFRSRPRGG  360
RKRMCPTVEM LVRKRVTPPD QFGPETEFLS QFFSQEEMAE ILISLMGLLL LCICIEIMTM  420
TAEAECMKYK DPNQPLNTRI NDLLSRMTLE EKIGQMTQID RSVASPEVMY KYKIGSVLSG  480
GGSVPAKNAS AETWIRMVND FQNGSLSTRL AIPLIYGIDA IHGHNNVYKA TIFPHNVGLG  540
ATRQRIGAAT ALEIRATGIH YTFAPCVAVC RDPRWGRCYE SYSEDPRLVQ AMTEIIPGLQ  600
GEIPANSRKG VPYVSGNDKV AACAKHYVGD GGTAMGINEN NAVIDRHGLL SIHMPPYPSA  660
IIKGVASVMI SYSSWNGVKM HANRELITGF LKGTLGFKGF VISDWQGIDM ITSPSHSNYS  720
YSIMKGISAG IDMIMVPYNY TEFIEGLTFR VKNKIIPMSR IDDAVKRILR VKFTMGQFEK  780
PLADLRLVSQ LGSQEHRELA REAVRRSLVL LKNGECAEKP ILPLPKKTSK ILVAGTHADD  840
LGYQCGGWTI EWQGHSGNNL TQGTTVLSAI RNTVAPETRV VYKKNPDAKF MKSNNFSHAI  900
VIVGEPPYAE GAGDNLNLTI PKSGRRVIRN VCGASKCVVC LITGRPVVIE PYLSIIDALV  960
AAWLPGTEGQ GVADVLFGDY GFTGKLPRTW FKSVHQLPMN VGDPDYDPLF AYGYGLTTQP  1020
TNAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3wli_A0.042410214606Beta-D-glucan exohydrolase isoenzyme ExoI
3wlo_A0.042410214606Beta-D-glucan exohydrolase isoenzyme ExoI
6md6_A0.042410214606Beta-D-glucan exohydrolase isoenzyme ExoI
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03614.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300933.20.0PREDICTED: lysosomal beta glucosidase-like isoform X1
TrEMBLM5VW210.0M5VW21_PRUPE; Uncharacterized protein
STRINGXP_004300933.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.26e-92transcription factor IIIA