PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02408.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 717aa    MW: 81866.8 Da    PI: 8.0666
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02408.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.91.2e-31521512102
                              HHHHHHHHHCTG........GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSE CS
             HSF_DNA-bind   2 Flkklyeilede........elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiw 79 
                              Fl+k+y++le+e          ++++sw+ +gn f+v+ + ef++ +LpkyFkh+nf+SF+RQLn+YgFkk++ ++         w
  mrna02408.1-v1.0-hybrid  52 FLSKTYDLLEEEeeedkdggGRRSIVSWNGEGNGFIVWSPAEFSELLLPKYFKHNNFSSFIRQLNTYGFKKTSPKR---------W 128
                              9*********77667777778899************************************************9998.........* PP

                              EEEESXXXXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  80 eFkhksFkkgkkellekikrkks 102
                              eFkh++F+kg +++l +i+rkk 
  mrna02408.1-v1.0-hybrid 129 EFKHEKFQKGCRHMLVEINRKKC 151
                              ********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-3442144IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.39E-2648149IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.8E-4248149IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.5E-2852149IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE profilePS513755.623283317IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.5E-11342542IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.901352386IPR002885Pentatricopeptide repeat
PfamPF138121.7E-5376434IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.923387421IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.6E-5391422IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.939422456IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.171458488IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.93493523IPR002885Pentatricopeptide repeat
PfamPF015351.1497517IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.634528562IPR002885Pentatricopeptide repeat
PfamPF015350.28532559IPR002885Pentatricopeptide repeat
SuperFamilySSF484527.51E-5533628IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.665563597IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.5E-11574628IPR011990Tetratricopeptide-like helical domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MDLLIPNRTG FPVRPPNGPK QSAFHCPIFY IDISEVNHGT SQSSRTRSPA PFLSKTYDLL  60
EEEEEEDKDG GGRRSIVSWN GEGNGFIVWS PAEFSELLLP KYFKHNNFSS FIRQLNTYGF  120
KKTSPKRWEF KHEKFQKGCR HMLVEINRKK CEPSAFPVYL KASEESTSAT GGINRSMSNA  180
AEQENQSLLL MEENKNLRKQ KMELQMQLSQ FKALETKLLD CVVMDSKLSF VKTLIQNAIT  240
SRSYYTSRTK KPTLYTVISP LGDKKQTVTP ELDNWVSKGN KVSVAELHRI IRDLRKRKRF  300
SQALEVSEWM NEKSVYKFRS SEHAVQLDLI GRVRGFVSAE EYFTKLEDED KDCRTYGALL  360
NCYVRQLQTE KSLAHLRKMQ ELGFASSPLD YNGIMCLYTN SGQHEKVPGV LAEMKENNVS  420
PDNFSYRICI NSYGVRSDLE GVEKVLKEME GQPHIVMDWN TYAVVADFYM KAGQTNKAIE  480
ALKMSEERLD TESGLGYNFL ISLYANMGNK DEVLRLWGLE KSACKRCINR DYICMLVSLV  540
KLGEFEEAEM VLKEWDMSGN CYDFRVPQTV VVGYSAKGLH ERAEALLEDL MEKGKATTLK  600
CWELVASGYV AKGEMEKAFK CVNVALSVWT EKGRRPNDSL FTTILSWLGD ERSVEVVEVF  660
VGSLRKVMPV NKPMYHALLK AYIRGGEEVS TIVDRMKTDK IDHDKETGKI LDMRPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9h_A5e-1635268615345pentatricopeptide repeat protein dPPR-U8G2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02408.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295631.10.0PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial
SwissprotQ84JR30.0PP334_ARATH; Pentatricopeptide repeat-containing protein At4g21705, mitochondrial
TrEMBLA0A498JYW40.0A0A498JYW4_MALDO; Uncharacterized protein
STRINGXP_004295631.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF353522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-38heat shock transcription factor B2A
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]