PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna02381.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 345aa MW: 39091.9 Da PI: 8.8606

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna02381.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.6	1.4e-10	13	65	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 r+ + +E++RR++++ ++eL +llP+ + +s+ s + Av+YIk+Lq mrna02381.1-v1.0-hybrid 13 RADRKTIEKNRRNQMKALYSELNSLLPHhQ---HSREvTSLPDQIDAAVNYIKKLQ 65 566789********************55...88889***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.02E-7	9	69	No hit	No description
SuperFamily	SSF47459	3.27E-10	11	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.198	11	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-10	13	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-6	14	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-6	17	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MDQQQYPSSS SCRADRKTIE KNRRNQMKAL YSELNSLLPH HQHSREVTSL PDQIDAAVNY 60 IKKLQTNLEK LRAKKDRHMG VERITNNRNG AYGSGPNGSP QIEIREIGSA LDVVLITGLD 120 FQFMFEGAIR LLLEEGADIV NASFSVVEDT IFHTIHSKIE ECAPGTVAAR ISDRLRKFVN 180 EASRSSSITL GSTRPCRELN YTKKLQSNMD KTREKKDNLM RVGFSVHVNL ACGFACFLMR 240 ELADIVNASF SVVEDAIFHI IDSKIPVCLV VKSWIIVSMG QLVFQFILPT WAREWVLTAK 300 LFVHRSSGFS DDFVFKFHAE EQSSIMMQRQ SQVLKMTCNE MKHK*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MDQQQYPSSS SCRADRKTIE KNRRNQMKAL YSELNSLLPH HQHSREVTSL PDQIDAAVNY  60
IKKLQTNLEK LRAKKDRHMG VERITNNRNG AYGSGPNGSP QIEIREIGSA LDVVLITGLD  120
FQFMFEGAIR LLLEEGADIV NASFSVVEDT IFHTIHSKIE ECAPGTVAAR ISDRLRKFVN  180
EASRSSSITL GSTRPCRELN YTKKLQSNMD KTREKKDNLM RVGFSVHVNL ACGFACFLMR  240
ELADIVNASF SVVEDAIFHI IDSKIPVCLV VKSWIIVSMG QLVFQFILPT WAREWVLTAK  300
LFVHRSSGFS DDFVFKFHAE EQSSIMMQRQ SQVLKMTCNE MKHK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna02381.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294013.1	1e-133	PREDICTED: transcription factor bHLH126
TrEMBL	A0A2P6Q481	1e-102	A0A2P6Q481_ROSCH; Putative transcription factor bHLH family
STRING	XP_004294013.1	1e-133	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF906	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-44	bHLH family protein

Link Out ? help Back to Top
Phytozome	mrna02381.1-v1.0-hybrid