PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna02297.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 207aa MW: 23458.3 Da PI: 5.3683 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.3 | 4.4e-22 | 116 | 201 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 Y+eY+ ++GFsv ++k +k+ n+ + + +++Cskeg++ +++ + e ++++r etrtgC ak++ +++++ w+vt ++ eHnH mrna02297.1-v1.0-hybrid 116 LYCEYGVRIGFSVWIDKRRKT--NNVVRQVNYCCSKEGFKLDSDPS-EVNKTHRLETRTGCPAKIRFGLQENNLWKVTLFVPEHNH 198 7***************98888..889****************9999.99999********************************** PP FAR1 88 ela 90 la mrna02297.1-v1.0-hybrid 199 RLA 201 996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-19 | 116 | 201 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSLRVHKHGI FGVRLSNPSL ALSDSDEWNR GKMRAGTAAI SAAVTDWEWV FGVSAAVIIQ 60 KFFSPAGEPL IDIEDDEEDI MTSDLEKHPM IVNRQASNDE NLFGVTVNSE EEAYNLYCEY 120 GVRIGFSVWI DKRRKTNNVV RQVNYCCSKE GFKLDSDPSE VNKTHRLETR TGCPAKIRFG 180 LQENNLWKVT LFVPEHNHRL ADPEER* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna02297.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011463236.1 | 1e-87 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A251QFY5 | 1e-38 | A0A251QFY5_PRUPE; Uncharacterized protein | ||||
STRING | XP_004292735.1 | 8e-72 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3607 | 9 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-14 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna02297.1-v1.0-hybrid |