PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna02273.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 267aa MW: 30785.8 Da PI: 7.3641

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna02273.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	208.5	3.7e-64	2	264	103	374
GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 e v++e+r+H iD++i G+QW +++aLa+R+e p l iT+vg k++++etgerLa++A++l++pfe++ +++++++ mrna02273.1-v1.0-hybrid 2 IETVANERRIHLIDLEIRSGVQWTGFMEALAEREECPVeLLTITAVGV---RGKQNIKETGERLASVAKSLNLPFEYKEVIVSDMQ 84 58899***************************7666489**9...589**************************** PP GRAS 188 dleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 d++ + + +++ +Ea++V l l ++ ++ +le+ +++++++++P ++vv+e ea+hns+sF++rf++al yysa+fd+le mrna02273.1-v1.0-hybrid 85 DIKDHLFdEIEDEEAVVVYAPLVLRTMIMRPRCLEN----LMRVMRNINPCLMVVMEVEANHNSPSFVNRFIDALFYYSAFFDCLE 166 99999445559*************99999999....*****************************************9 PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 + + ++++ r+++E l++ i+n+va+eg+er++r ++ Wr + ++ + ++++s++ qa+l+ +k+ +++ + ++l mrna02273.1-v1.0-hybrid 167 NCM-KHNKYRVFIEDL-LRKGIQNIVAAEGSERVARSVKMDVWRTFFARFRMVEMSFSNSSLYQASLVAKKYCC--TTLDRNGKCL 248 996.888999999998.*************************************************9994..59**** PP GRAS 359 vlgWkdrpLvsvSaWr 374 + gWk+ p+ s+SaW+ mrna02273.1-v1.0-hybrid 249 TVGWKGTPIHSLSAWK 264 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	32.702	1	246	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-61	2	264	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MIETVANERR IHLIDLEIRS GVQWTGFMEA LAEREECPVE LLTITAVGVR GKQNIKETGE 60 RLASVAKSLN LPFEYKEVIV SDMQDIKDHL FDEIEDEEAV VVYAPLVLRT MIMRPRCLEN 120 LMRVMRNINP CLMVVMEVEA NHNSPSFVNR FIDALFYYSA FFDCLENCMK HNKYRVFIED 180 LLRKGIQNIV AAEGSERVAR SVKMDVWRTF FARFRMVEMS FSNSSLYQAS LVAKKYCCTT 240 LDRNGKCLTV GWKGTPIHSL SAWKFR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-25	3	266	122	381	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna02273.1-v1.0-hybrid

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024174485.1	1e-170	DELLA protein RGL1-like
TrEMBL	A0A2P6PI64	1e-169	A0A2P6PI64_ROSCH; Putative transcription factor GRAS family
STRING	XP_004301794.1	1e-167	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-47	RGA-like 2

Link Out ? help Back to Top
Phytozome	mrna02273.1-v1.0-hybrid