PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna02271.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 650aa MW: 73413.4 Da PI: 7.1438

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna02271.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	266.2	1.1e-81	284	647	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfse 86 +lLl++Ae v +++e+a++lL + + +as +g+ +q+++ yf+eAL++r+ +++y++ +e s++ + a+ + ++ mrna02271.1-v1.0-hybrid 284 AHLLLAAAEKVGYQQFERASRLLLQCEGIASFKGTLVQKVVCYFAEALRERIDM-ETGMYSSKGNQEMSHYVqGLGSNLAYIACHQ 368 69************************************************97.8888888766666654446666667777888 PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAee 171 P++ + +++a qa+ eav++e+r+H+iD++i G+QW +++aLa+R++ p l iT+vg k++++etg+rLa++A++ mrna02271.1-v1.0-hybrid 369 EVPFHPVLQFAAIQAMIEAVANESRIHVIDLEIRFGVQWTGFIKALAERKKCPVeLLSITAVGV---RGKQNIKETGKRLASLAKS 451 89*******************************************97665499**9...589************ PP GRAS 172 lgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 l++pf+f+ +++++++d++ + + ++k +Eal+V ++ l ++ ++ +le+ +++++++++P ++vv+e ea+hns+sF++r mrna02271.1-v1.0-hybrid 452 LNLPFKFKEVIVSDMKDINGHFFnEIKDDEALVVYASFVLRTMIPRPRCLEN----LMRVMRNINPSLMVVIEVEANHNSPSFVNR 533 ***************999956778************99999999....************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 f++al yysa+fd+le+ + ++++ r+ +E l++ i+n+va+eg+er+ r +l Wr+ + ++G+ + ++s++ qa+l+ + mrna02271.1-v1.0-hybrid 534 FIDALFYYSAFFDCLENCM-KHNKYRVIMEDL-LRKGIRNIVAAEGRERVVRSVKLDVWRAFFAKFGMVETSFSNSSLYQASLVAK 617 ***********9996.777888888877.*************************************************** PP GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 kv +++ + + l+ gWk+ p+ s+SaW+ mrna02271.1-v1.0-hybrid 618 KVCC--TTLDRNGKGLTVGWKGTPIHSLSAWE 647 994..5999999*****************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00018	0	228	240	IPR018247	EF-Hand 1, calcium-binding site
PROSITE profile	PS50985	39.987	257	629	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.9E-79	284	647	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence Send to blast
MANAFFSSTP LDFGIPGGLS PPQLEEYDKE DTVMFNVGKG NHLFGLDDDQ LGEMNTLSSE 60 HGFYQDNKAK KGGVVSYLSK DQNQHHDLDH QQQQQQSKPN FLILDNFNFE TVSSQHGFYH 120 GSMAGMNDQQ QQQQVKLSSS CLENYSSFNF SFQSGQVTQP VKDGAQFRQN HCSDIVEANK 180 QLPPPQSSIA TLELLKSYGS AFKMLKRERQ SSSRTTRGNE IDQNNNYDVN GTQKLSTEEV 240 MRVAGARYVQ FSSQGYEDFY MPMHHFGYAL SGLCEEETKD VEIAHLLLAA AEKVGYQQFE 300 RASRLLLQCE GIASFKGTLV QKVVCYFAEA LRERIDMETG MYSSKGNQEM SHYVQGLGSN 360 LAYIACHQEV PFHPVLQFAA IQAMIEAVAN ESRIHVIDLE IRFGVQWTGF IKALAERKKC 420 PVELLSITAV GVRGKQNIKE TGKRLASLAK SLNLPFKFKE VIVSDMKDIN GHFFNEIKDD 480 EALVVYASFV LRTMIPRPRC LENLMRVMRN INPSLMVVIE VEANHNSPSF VNRFIDALFY 540 YSAFFDCLEN CMKHNKYRVI MEDLLRKGIR NIVAAEGRER VVRSVKLDVW RAFFAKFGMV 600 ETSFSNSSLY QASLVAKKVC CTTLDRNGKG LTVGWKGTPI HSLSAWEFR*

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence Send to blast

MANAFFSSTP LDFGIPGGLS PPQLEEYDKE DTVMFNVGKG NHLFGLDDDQ LGEMNTLSSE  60
HGFYQDNKAK KGGVVSYLSK DQNQHHDLDH QQQQQQSKPN FLILDNFNFE TVSSQHGFYH  120
GSMAGMNDQQ QQQQVKLSSS CLENYSSFNF SFQSGQVTQP VKDGAQFRQN HCSDIVEANK  180
QLPPPQSSIA TLELLKSYGS AFKMLKRERQ SSSRTTRGNE IDQNNNYDVN GTQKLSTEEV  240
MRVAGARYVQ FSSQGYEDFY MPMHHFGYAL SGLCEEETKD VEIAHLLLAA AEKVGYQQFE  300
RASRLLLQCE GIASFKGTLV QKVVCYFAEA LRERIDMETG MYSSKGNQEM SHYVQGLGSN  360
LAYIACHQEV PFHPVLQFAA IQAMIEAVAN ESRIHVIDLE IRFGVQWTGF IKALAERKKC  420
PVELLSITAV GVRGKQNIKE TGKRLASLAK SLNLPFKFKE VIVSDMKDIN GHFFNEIKDD  480
EALVVYASFV LRTMIPRPRC LENLMRVMRN INPSLMVVIE VEANHNSPSF VNRFIDALFY  540
YSAFFDCLEN CMKHNKYRVI MEDLLRKGIR NIVAAEGRER VVRSVKLDVW RAFFAKFGMV  600
ETSFSNSSLY QASLVAKKVC CTTLDRNGKG LTVGWKGTPI HSLSAWEFR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-36	291	649	27	381	Protein SCARECROW
5b3h_A	4e-36	291	649	26	380	Protein SCARECROW
5b3h_D	4e-36	291	649	26	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna02271.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301794.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A2P6PI64	0.0	A0A2P6PI64_ROSCH; Putative transcription factor GRAS family
STRING	XP_004301794.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	5e-51	RGA-like 1

Link Out ? help Back to Top
Phytozome	mrna02271.1-v1.0-hybrid