PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02230.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 620aa    MW: 68262.2 Da    PI: 9.8715
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02230.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.8e-08521570147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                              r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  mrna02230.1-v1.0-hybrid 521 RRPFSVSEVEALVQAVEKLGTGRWRDVKMRAFenaKHRTYVDLKDKWKTL 570
                              678999********************9766667**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542368.88E-8334423IPR029071Ubiquitin-related domain
PROSITE profilePS500538.546340410IPR000626Ubiquitin domain
PROSITE profilePS5129415.459516575IPR017930Myb domain
SMARTSM007176.2E-8520573IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-10521571IPR009057Homeodomain-like
SuperFamilySSF466891.06E-15522603IPR009057Homeodomain-like
CDDcd116607.70E-17522572No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MALQKRLDYG FNGFQVPVTP RAPRSARRRS AISKRFEDNP MGAFDLLATV AGKLLLEGES  60
SAASSHTSTE KKSGHNQSCS SKESPVHQNE SHSVMTTSNC SERFVSDMLV GGKCKNEIGS  120
FTSKIQAGFS MYRESGECKL DGEAKVIVKD ETNKRGKVLI GTGADNVEDP MVWEGEPPAL  180
VSSDSSTKVP ICVDHIPQKP IPASRDDIKV VSRDDDENSS GCTHPSTTTR YLRTAPRIGD  240
RRIRKILASR YWKATPKMKD EAHSNSYRDM RPMYHGRKNG YKRQRSQMTV PFKKRRLFDR  300
STVGKSDGGI TSESFFDSAN AVSSSVAGQH SAFQSRNSHV KLRIKSFRVP ELFIEIPETA  360
TVGSLKKTVM DAVTAVLGGG LCVGVLLQGK KVRDDSKTLQ QTGISQDDQL DSLGFTLEPN  420
PSHTPTPLCS GDSPRMLPCD ALQPLIRYAP DPSSEASLEP HMAALGSFIE SDHDSAPSPT  480
DTSTTDSKAL VVVPGMSAEA LAVVPGNRKS KRFDIGQRRI RRPFSVSEVE ALVQAVEKLG  540
TGRWRDVKMR AFENAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLTAHAY  600
WSQQQAKQQL KHPESCVLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-575056111107Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02230.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2249233e-57CU224923.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465323.10.0PREDICTED: LOW QUALITY PROTEIN: telomere repeat-binding protein 5
SwissprotQ6R0E31e-165TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A2P6QIX70.0A0A2P6QIX7_ROSCH; Putative transcription factor MYB-HB-like family
STRINGEMJ099100.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-139TRF-like 2