PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna02199.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 1039aa MW: 114934 Da PI: 8.2949

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna02199.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.1e-14	825	876	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A+e++k+L+ mrna02199.1-v1.0-hybrid 825 QRMTHIAVERNRRKQMNEHLAILRSLMPES---YAQRGDQASIVGGAIEFVKELE 876 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06423	2.1E-13	448	517	IPR009447	GWT1
Pfam	PF06423	4.8E-7	527	560	IPR009447	GWT1
CDD	cd00083	5.45E-13	823	880	No hit	No description
SuperFamily	SSF47459	2.49E-16	823	892	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.466	824	875	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-11	825	876	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-13	825	889	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	830	881	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006506	Biological Process	GPI anchor biosynthetic process
GO:0016021	Cellular Component	integral component of membrane
GO:0016746	Molecular Function	transferase activity, transferring acyl groups
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1039 aa Download sequence Send to blast
MDSHWSSEAD RCGSEVDWRD DSGRWWREWR SVMPCGCMTT VCWRWGNGMA QGDRWILFGS 60 CSLVACLLRA LGSGGSGSTL GLGVLSSNDQ ASDPETQITS VGAQEDWVIS PGVDGTSTNE 120 RQLDRDTQSF PNRTSPTSSD WLTSTFDHHG FVSQVSQSKQ TTQRRVTALF VSNLTGTSML 180 EIAAITTIIP LLFLVRRSLG FMHPSDVVTL KKDDDAKVGA KSWQAYMAAL SVDFLFIMVP 240 FVLFLTVLAD WMYIWTTLLT LLVVFSFAAK RFGFGSTLKE EPDSVRKTIT SHRVVMMILT 300 CLCILAVDFK IFPRRYAKTE TYGTGLMDFG VGSFVVINSF VSRQARNLSW EKWKTAIKST 360 TPLIILGLAR ILSTAGVDYQ VHAAEYGVHW NFFFTMAAIS FLTSIINMPA QYSGILGALI 420 LVGYEGWLVQ GLNMYLLSND RGSDIISQNK EGLFSIFGYW SMYLIGVQVG NFLFFSNRSS 480 ATTSRKKSTR NRAAILSLLF WLVTLVVDSH VERVSRRSGL AIVLVSDSLP GTKTSTIEEA 540 YNRNLLAIFL LANLLTGLIN FLVDTLFAST VKALSVMIAY AFMLTFIPGL LDFCGIRAQD 600 YAMIFRSFAS SPSSAKIGEE KQLFGWWSIP GTVFDNGLCN DLLNEVAAGL GMAGVHTKMH 660 KVGWVVKHMK TTGVSVSFGI YEVGKENQTR TRQRASSVTR SFHVPPLSIT DHREKLTMAL 720 EAIASSEPFN FIIYDTISAT PYSCQDSPAL AETSFIVENC AATTTPTMKA AGAQDQNQSG 780 IVALESCSTL GTRSRGLTSV TQQQGRKKRK RKPRVCKNKE EAETQRMTHI AVERNRRKQM 840 NEHLAILRSL MPESYAQRGD QASIVGGAIE FVKELEHLLQ SLEAQKLQLL PSNVVNEDSS 900 TTANSKVVQP IVTPLLQFLE CDISQGHQSS WSQQQTPSKF TSKTKADIAD IEVTLIETHA 960 NLRIVTQRIS PRQLSKLVAG VQTLQLTILH LTVNTIYPFV LYSISVKIEE GCLLTSVDDI 1020 AAAFYHMLRV IEEAAALC*

Sequence ? help Back to Top

Protein Sequence Length: 1039 aa Download sequence Send to blast

MDSHWSSEAD RCGSEVDWRD DSGRWWREWR SVMPCGCMTT VCWRWGNGMA QGDRWILFGS  60
CSLVACLLRA LGSGGSGSTL GLGVLSSNDQ ASDPETQITS VGAQEDWVIS PGVDGTSTNE  120
RQLDRDTQSF PNRTSPTSSD WLTSTFDHHG FVSQVSQSKQ TTQRRVTALF VSNLTGTSML  180
EIAAITTIIP LLFLVRRSLG FMHPSDVVTL KKDDDAKVGA KSWQAYMAAL SVDFLFIMVP  240
FVLFLTVLAD WMYIWTTLLT LLVVFSFAAK RFGFGSTLKE EPDSVRKTIT SHRVVMMILT  300
CLCILAVDFK IFPRRYAKTE TYGTGLMDFG VGSFVVINSF VSRQARNLSW EKWKTAIKST  360
TPLIILGLAR ILSTAGVDYQ VHAAEYGVHW NFFFTMAAIS FLTSIINMPA QYSGILGALI  420
LVGYEGWLVQ GLNMYLLSND RGSDIISQNK EGLFSIFGYW SMYLIGVQVG NFLFFSNRSS  480
ATTSRKKSTR NRAAILSLLF WLVTLVVDSH VERVSRRSGL AIVLVSDSLP GTKTSTIEEA  540
YNRNLLAIFL LANLLTGLIN FLVDTLFAST VKALSVMIAY AFMLTFIPGL LDFCGIRAQD  600
YAMIFRSFAS SPSSAKIGEE KQLFGWWSIP GTVFDNGLCN DLLNEVAAGL GMAGVHTKMH  660
KVGWVVKHMK TTGVSVSFGI YEVGKENQTR TRQRASSVTR SFHVPPLSIT DHREKLTMAL  720
EAIASSEPFN FIIYDTISAT PYSCQDSPAL AETSFIVENC AATTTPTMKA AGAQDQNQSG  780
IVALESCSTL GTRSRGLTSV TQQQGRKKRK RKPRVCKNKE EAETQRMTHI AVERNRRKQM  840
NEHLAILRSL MPESYAQRGD QASIVGGAIE FVKELEHLLQ SLEAQKLQLL PSNVVNEDSS  900
TTANSKVVQP IVTPLLQFLE CDISQGHQSS WSQQQTPSKF TSKTKADIAD IEVTLIETHA  960
NLRIVTQRIS PRQLSKLVAG VQTLQLTILH LTVNTIYPFV LYSISVKIEE GCLLTSVDDI  1020
AAAFYHMLRV IEEAAALC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	805	810	RKKRKR
2	805	811	RKKRKRK
3	806	811	KKRKRK
4	825	836	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna02199.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	6e-56	bHLH family protein

Link Out ? help Back to Top
Phytozome	mrna02199.1-v1.0-hybrid