PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01596.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 604aa    MW: 67790.8 Da    PI: 7.0411
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01596.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.54.7e-22501558259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dg++W+KYGqK +k+    rsY++C  ++C++kk+ e s+++p+ + ++Yeg Hnh+
  mrna01596.1-v1.0-hybrid 501 EDGFEWKKYGQKFIKNVGKFRSYFKCQNSNCRAKKRAEWSSSEPDKLRVVYEGVHNHT 558
                              7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF561125.4E-7740341IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.206.0E-2742132No hitNo description
PROSITE profilePS5001136.47163345IPR000719Protein kinase domain
PfamPF077144.5E-4465341IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE patternPS0010706998IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.103.2E-44133354No hitNo description
PROSITE patternPS001080190202IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS5081119.336495560IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-22495558IPR003657WRKY domain
SuperFamilySSF1182901.14E-20497558IPR003657WRKY domain
SMARTSM007746.7E-22500559IPR003657WRKY domain
PfamPF031062.0E-19501557IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0005886Cellular Componentplasma membrane
GO:0009506Cellular Componentplasmodesma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MCDKLSTFFS ESPKDQSPSL NPREDDRNLP SNPEEVEILR RDSAANPLIA FTFNELKIIT  60
ANFRQDRLLG GGGFGSVYKG FITEDLREGL SHLPVAVKVH DGDNSYQGHR EWLAEVIFLG  120
QLSHPNLVKL IGYCCEDKQR VLIYEYMARG SVENNLFSRV LLPLPWSIRM KIAFGAAKGL  180
AFLHDAEKPV IYRDFKTSNI LLDLDYNAKL SDFGLAKDGP VGDKSHVSTR IMGTYGYAAP  240
EYILTGHLTP RSDVYSFGVV LLELLTGRKC LDKSRPAREQ NLTDWALPML KEKKKLLNII  300
DPRLEGEYPI KGVHKAAMLV YHCLNRNPKA RPLMRDIVDS LEPLQVSDEV SAEKTITEII  360
QFPDGEIRRK EELLYQVASG HVQVSLAENM IPSRIAAGAE VIYQKEHRVI LALLLRSISA  420
LLSLKLTYKL HSEEGRVVFT VFLDRIAATS SRRTKVVNHV CLLVDSLKTD HHDEDEGDGE  480
GEEEVQDNNN SGGSNKVVIP EDGFEWKKYG QKFIKNVGKF RSYFKCQNSN CRAKKRAEWS  540
SSEPDKLRVV YEGVHNHTDN NASSAGSSTS HSSSSLNPSA DANQYDLYTQ VFGNQSSHWD  600
KKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_A1e-1222937556400Probable serine/threonine-protein kinase PBL2
6j5t_D1e-1222937556400Probable serine/threonine-protein kinase PBL2
6j5t_I1e-1222937556400Probable serine/threonine-protein kinase PBL2
6j5t_J1e-1222937556400Probable serine/threonine-protein kinase PBL2
6j5t_M1e-1222937556400Probable serine/threonine-protein kinase PBL2
6j5u_C1e-1222937556400Probable serine/threonine-protein kinase PBL2
6j5v_C1e-1222937556400Probable serine/threonine-protein kinase PBL2
6j6i_A1e-1222937556400Probable serine/threonine-protein kinase PBL2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01596.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294946.10.0PREDICTED: probable receptor-like protein kinase At5g56460
SwissprotQ9FM850.0PBL16_ARATH; Probable serine/threonine-protein kinase PBL16
TrEMBLA0A2P6QNP50.0A0A2P6QNP5_ROSCH; Uncharacterized protein
STRINGXP_004294946.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF811222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-14WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Marmagne A, et al.
    A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome.
    Mol. Cell Proteomics, 2007. 6(11): p. 1980-96
    [PMID:17644812]
  2. Pierre M, et al.
    N-myristoylation regulates the SnRK1 pathway in Arabidopsis.
    Plant Cell, 2007. 19(9): p. 2804-21
    [PMID:17827350]
  3. Zhang J, et al.
    Receptor-like cytoplasmic kinases integrate signaling from multiple plant immune receptors and are targeted by a Pseudomonas syringae effector.
    Cell Host Microbe, 2010. 7(4): p. 290-301
    [PMID:20413097]