PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01197.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 735aa    MW: 79160 Da    PI: 6.2412
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01197.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.2e-32307364260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
  mrna01197.1-v1.0-hybrid 307 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHPK 364
                              7****************************************.***************85 PP
2WRKY102.82e-32523581159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  mrna01197.1-v1.0-hybrid 523 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 581
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.24E-25304365IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-28304365IPR003657WRKY domain
SMARTSM007746.4E-36306364IPR003657WRKY domain
PROSITE profilePS5081123.158307365IPR003657WRKY domain
PfamPF031061.1E-24307363IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-37508583IPR003657WRKY domain
SuperFamilySSF1182901.96E-28515583IPR003657WRKY domain
PROSITE profilePS5081138.32518583IPR003657WRKY domain
SMARTSM007741.9E-37523582IPR003657WRKY domain
PfamPF031067.6E-25524581IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MAGMDDNVAI IGDWVPPSPS PRDFFSSMLV DGIGSRSFLD SPNSNKAEDF FLGSREGSTS  60
GKNLSQGNGT GDEITEMGSF SEYKSNTRGG LVERIAARAG FNAPRLNTES IRSSDLSLSS  120
DVRSPYLTIP PGLSPTTLLD SPVFLSNSLA QPSPTTGKFP FVSNGHGRNC TLMTEAADKA  180
NFFEDLNSSF AFKPLGESGS FFLGPTSKRT FPSIEVSVQS ENSSQNMEPT KVQNQNANNF  240
QLQPDFSRTS TEKDNGANTV SADPRGFDTV GGSTEHSPPP DEQPEEEGDQ RGGGDSMAAT  300
GGGTPSEDGY NWRKYGQKQV KGSEYPRSYY KCTHPNCQVK KKVERSHEGH ITEIIYKGAH  360
NHPKPPPNRR SGAIGSSNPL IDMRSDVLQQ GGPQTGADGD LVWASAQKAT GGAPDWKHDN  420
LEVTSSASAG PDYGQQSTSM QAQNGAHLES GDVVDASSTF SNDEDEDDRG THGSVSLVYD  480
GEGDESESKR RKIEAYATEM SGATRAIREP RVVVQTTSEV DILDDGYRWR KYGQKVVKGN  540
PNPRSYYKCT NAGCTVRKHV ERASHDLKSV ITTYEGKHNH DVPAARNSSH VNSGPSGNMP  600
GQVSGSATQT HPHRPEPSQV HNSMARFERP MSMGSFSLPG RQQLGPPQGF SFGMNQPGLA  660
NLAMAGFGPG QHKVPVLPVH HPYFAQQRQV SEMGFMLPKG EPKVEPISEP GLNMSNASSV  720
YQQLMSRLPL GPQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36307584878Probable WRKY transcription factor 4
2lex_A2e-36307584878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01197.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294869.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_011461536.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_011461537.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2P6QL730.0A0A2P6QL73_ROSCH; Putative transcription factor WRKY family
STRINGXP_004294869.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]