PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01102.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 423aa    MW: 47403.6 Da    PI: 8.3846
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01102.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.6e-07222244123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C+ Cgk F+r  nL+ H+r H
  mrna01102.1-v1.0-hybrid 222 HYCQVCGKGFKRDANLRMHMRAH 244
                              68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.62E-6220247No hitNo description
PROSITE profilePS5015712.653222249IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-6222248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034222244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
SMARTSM0035577285318IPR015880Zinc finger, C2H2-like
SMARTSM0035522323345IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MNINQGSTSN CFESMYMTDR DAVSSFSLEP NSSSSGAVLS QDQNHSTSLL YSLSVLKEKV  60
HQAKSLVGVL IAPADHHQSQ QQQLPESTTM GAMASMSNVI QEIIVTASSM MFTCQQMSLV  120
APGNDTRSEP NFTISTAGRS NTRDAGFYPT HDQTLDWFST ESYNDCLPRD VISRSHRQVE  180
TKELPPRVQR NNALQVENPP PENSSYDIIE LDAADLLAKY THYCQVCGKG FKRDANLRMH  240
MRAHGDEYKT SIALSNPLKN NNMNSAMNVN GSSNAESSMK LPRKYSCPQE GCRWNQKHAK  300
FQPLKSMICV KNHYKRSHCP KMYVCKRCNR KQFSVLSDLR THEKHCGDLR WQCSCGTTFS  360
RKDKLMGHVA LFVGHTPVII NSNFPIRHGR AESQAAAGGL MQRARELIIP EYIGYWVLCT  420
ED*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01102.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294539.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ0WT241e-109STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2P6QGQ30.0A0A2P6QGQ3_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004294539.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-107C2H2 family protein