PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00903.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 589aa    MW: 62906.3 Da    PI: 9.7025
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00903.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-056284123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C+ C+k F r  nL+ H r H
  mrna00903.1-v1.0-hybrid 62 FICEVCNKGFQREQNLQLHRRGH 84
                             89*******************88 PP
2zf-C2H213.10.00028138160123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++C+k++  +s+ k H +t+
  mrna00903.1-v1.0-hybrid 138 WKCEKCSKRYAVQSDWKAHSKTC 160
                              58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121712.2E-56184IPR022755Zinc finger, double-stranded RNA binding
SuperFamilySSF576671.15E-76284No hitNo description
Gene3DG3DSA:3.30.160.601.5E-56284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00526284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.996284IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355160103133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-5126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.15E-7133158No hitNo description
SMARTSM00355130138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MAAASSSLAF FGNNSRDENQ NQLMTSLQQP PPASSTAPIS TTPPTAPPPK KRRNQPGNPS  60
KFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTNKEPKR KVYLCPEPTC VHHDPSRALG  120
DLTGIKKHFS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG TLFSRRDSFI  180
THRAFCDALA QESARHPSSL SAIATSSHLY PGNNQMMSLG LSQMGGGSSL PPNNMLRLGT  240
TGAGGAAKFE HFMNPSSFGQ AQPMPNSSAS FFNQGFQDQQ QSLNGSFAAN KSLHGLMQLP  300
DLQSNTPSNN SPSSTTTAAG SLFNLGFFSN NNSDHHQFSD GNGGSQGTTL FPNGMTDHIG  360
SALPSSLFGN SLQHENMTGA HMSATALLQK AAQMGSTTST ESSSLLRGLA GGTSSNTRAG  420
TKSISGRQLV SSNSNVGGVS FSRESSSGGE HEQHMRSQQQ QQQQVENENH HLQGLIMNSL  480
ANGNSSAASI FGSSSADHHN NFGAHGFANG GATRVSLMDQ QQHNNTNFSN VDEAKLTLDF  540
LGVGGIVRNM GGGGGGYEHR GINMSSLDPE LKSSQQASQA YGGTSALQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34134201369Zinc finger protein JACKDAW
5b3h_F4e-34134201369Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna00903.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5641840.0AJ564184.1 Fragaria vesca microsatellite DNA, clone EMFv026.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297790.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
TrEMBLA0A2P6R4F70.0A0A2P6R4F7_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004297790.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.19e-99indeterminate(ID)-domain 5