PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00790.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 342aa    MW: 38613.3 Da    PI: 8.5101
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00790.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.6e-105695546
                             -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                             ++ Ed+ll +a k +G++ W +Ia+ +  gRt++ +k+r+ +
  mrna00790.1-v1.0-hybrid 56 SPKEDLLLCEAQKIFGNR-WIKIAKVVS-GRTDNVVKNRFST 95
                             689***************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-1542100IPR009057Homeodomain-like
SuperFamilySSF466892.17E-1342104IPR009057Homeodomain-like
PROSITE profilePS5129414.48347101IPR017930Myb domain
SMARTSM007173.9E-95199IPR001005SANT/Myb domain
CDDcd001673.62E-65696No hitNo description
PfamPF002495.8E-85695IPR001005SANT/Myb domain
PROSITE profilePS508089.308132194IPR003656Zinc finger, BED-type
SMARTSM006140.0083132187IPR003656Zinc finger, BED-type
SuperFamilySSF530981.44E-14203341IPR012337Ribonuclease H-like domain
PfamPF056996.3E-17283340IPR008906HAT, C-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MTAPHRPEET ETGQNRLIGA ENCTEPATAV PVCGSVSPEN WWYTYLNSDF KKGGCSPKED  60
LLLCEAQKIF GNRWIKIAKV VSGRTDNVVK NRFSTLCKKR ANTRPAYVPI PNPSTQHPVP  120
ILEDEGASNK KQKKCEAWAH YKMMKEDGVT DRNDRAMCNY CRTPIMCASR KNGTSAIGKH  180
LKICKKSPLY ELDYIPHCYI DVGTKQEDIE RISSQVNELL VKLYKEYKEF YPQVGNAYME  240
ADSVAPMDID GFANQPIVDV RVERLNKFVA LRKAKKVVEI CNEVDKYLME APENPKNKGF  300
ELSAWWKENT PRYPILSKVA KDVFDIPVST VASESAFSLG K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-124210349110B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna00790.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34803461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.25e-31MYB family protein