PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00752.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 278aa    MW: 30302.7 Da    PI: 4.9551
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00752.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.1e-07164207855
                              HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               E  RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  mrna00752.1-v1.0-hybrid 164 QEAARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 207
                              6778******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.055156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-6162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-14164225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-5165207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.94E-7168211No hitNo description
Gene3DG3DSA:4.10.280.105.7E-14169224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDPPVSLVNE CSYSNGNAGS YNLSEIWQFP MSGGGGGMGD SGGLRRQSFG QFGDVSGAIR  60
DVLGGGDPNQ MSLEQRTRKR RDAEDESSPK SSGNIGAGDC DGKRHKTGGR CGDENHEAKA  120
EVETSSGKPV EQSTTQPPDP PKQDYIHIFD FGVCEVQDGW RCIQEAARRE KISERMKILQ  180
DLVPGCNKVI GKALVLDEII NYIQSLQRQV EFLSMKLEAV NTRMTPTIEV FPSKEFGQQT  240
FDAAAMAFGT QPPREYSRGS SPEWLHMQVG GGFERTT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna00752.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297692.11e-178PREDICTED: transcription factor bHLH79 isoform X1
SwissprotQ69WS31e-58BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2P6R4I51e-160A0A2P6R4I5_ROSCH; Putative transcription factor bHLH family
STRINGXP_004297692.11e-177(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-77BIG PETAL P