PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00717.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 255aa    MW: 28738.5 Da    PI: 6.7878
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00717.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000287395123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C k F ++  L  H++ H
  mrna00717.1-v1.0-hybrid 73 FECQYCFKEFANSQALGGHQNAH 95
                             89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.47E-669100No hitNo description
Gene3DG3DSA:3.30.160.601.3E-47099IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.40673100IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MENTCESEDQ HGYSAGSCVD HEHKKLRLFG FELNPYKNVD ENIKAEGDES VNSSNTWKAS  60
TSSEAEQLDN KKFECQYCFK EFANSQALGG HQNAHKKERM KKKRLQLQAR KASINYYLQP  120
FQTLNHPHGS AASASWFYDP SSYVNNTEHF TLHEESQISF NPYDQNGSNE SAAQVSNWYA  180
FPGAAQFPYQ ELDDQSSRFT LTQTDRSGES RPVIFTKPNS ALPASTTQSS CKPLDLQLKL  240
GLPSKIRRSS RSEV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna00717.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297672.10.0PREDICTED: zinc finger protein 5
TrEMBLM5XQD41e-107M5XQD4_PRUPE; Uncharacterized protein
STRINGXP_004297672.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.12e-19zinc finger protein 5