PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna00252.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 292aa MW: 34237.6 Da PI: 5.1569

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna00252.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.5	2e-47	14	141	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWk 84 +pGfrFhPt+eelv +yLk+k+ +k+++l ++i+e+d+yk+eP++Lp + +++++++w+fFs+ + ky++ ++r nr+t+ gyWk mrna00252.1-v1.0-hybrid 14 QPGFRFHPTQEELVLYYLKRKICHKTFKL-NIITETDVYKCEPEELPglSLLQTGDRQWFFFSPINCKYPKkSTRMNRVTRLGYWK 98 69*************************.89***********644788899*********96478******** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd++v++ +++ vg+kktL+fykgrap+g++tdWvmhey+l mrna00252.1-v1.0-hybrid 99 VTGKDQTVIH-NSRPVGVKKTLIFYKGRAPRGNRTDWVMHEYTL 141 ******.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.23E-53	11	164	IPR003441	NAC domain
PROSITE profile	PS51005	50.762	13	164	IPR003441	NAC domain
Pfam	PF02365	1.2E-24	15	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MVSADDLVII FRQQPGFRFH PTQEELVLYY LKRKICHKTF KLNIITETDV YKCEPEELPG 60 LSLLQTGDRQ WFFFSPINCK YPKKSTRMNR VTRLGYWKVT GKDQTVIHNS RPVGVKKTLI 120 FYKGRAPRGN RTDWVMHEYT LHDEELKRCG NVPDPYALCK VYKKSGLGPK TGEHYWAPFQ 180 EEDCSDMDEV VQETPVKKIE DQIRVTPGVN SYSESYEIQH SSFDEDMEEF MKRIAGEAEQ 240 DMYYEASMFL QDLRPRFDEH LCMDPELDAG NYIDHDQLNA EESSQFHNQD E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-42	15	164	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-42	15	164	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-42	15	164	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-42	15	164	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-42	15	164	22	168	NAC domain-containing protein 19
3swm_B	2e-42	15	164	22	168	NAC domain-containing protein 19
3swm_C	2e-42	15	164	22	168	NAC domain-containing protein 19
3swm_D	2e-42	15	164	22	168	NAC domain-containing protein 19
3swp_A	2e-42	15	164	22	168	NAC domain-containing protein 19
3swp_B	2e-42	15	164	22	168	NAC domain-containing protein 19
3swp_C	2e-42	15	164	22	168	NAC domain-containing protein 19
3swp_D	2e-42	15	164	22	168	NAC domain-containing protein 19
4dul_A	2e-42	15	164	19	165	NAC domain-containing protein 19
4dul_B	2e-42	15	164	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269\|PubMed:24045017}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna00252.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold and drought stresses. {ECO:0000269\|PubMed:17158162}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004304910.1	0.0	PREDICTED: NAC domain-containing protein 78-like
Swissprot	Q9XIC5	2e-78	NAC17_ARATH; NAC domain-containing protein 17
TrEMBL	A0A2P6R7N2	1e-131	A0A2P6R7N2_ROSCH; Putative transcription factor NAM family
STRING	XP_004304910.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF25899	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	1e-80	NAC domain containing protein 17

Link Out ? help Back to Top
Phytozome	mrna00252.1-v1.0-hybrid

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Van Aken O,Ford E,Lister R,Huang S,Millar AH Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance. Plant J., 2016. 88(4): p. 542-558 [PMID:27425258] Hu Z, et al. Mitochondrial Defects Confer Tolerance against Cellulose Deficiency. Plant Cell, 2016. 28(9): p. 2276-2290 [PMID:27543091] Chi YH, et al. The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis. Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647 [PMID:28088515] Van Aken O,Pogson BJ Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death. Cell Death Differ., 2017. 24(6): p. 955-960 [PMID:28498364] Cheng P, et al. The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis. Front Plant Sci, 2018. 9: p. 182 [PMID:29497438]