PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00007094.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 261aa    MW: 28109.3 Da    PI: 6.3419
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00007094.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.25.5e-13104129227
                                     -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                     ++++Cr+++ tGtCkyG+ Ck++H++
  FANhyb_rscf00007094.1.g00001.1 104 DQPECRYYMNTGTCKYGAECKYHHPK 129
                                     689*********************96 PP
2zf-CCCH33.95.3e-11146172127
                                     --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                     ++++ C+++  +G+CkyG++C+F H++
  FANhyb_rscf00007094.1.g00001.1 146 PGQPVCSNYIMYGICKYGPTCRFDHPF 172
                                     5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.4E-6102129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.145102130IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10104129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-7104130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-6108129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497145173IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5145172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6145171IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-7147172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4150171IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
STVVPSSGVP YTGGLSAWSF PRAPYVAGPL IATPQPYMPA VVLSPPQGVL PAHGWNTYVG  60
NLSPVSSTSI LGSNLTYNSR GQGESASNGQ VHLPSSPNLP QRPDQPECRY YMNTGTCKYG  120
AECKYHHPKE RIAESATNPL GLPSRPGQPV CSNYIMYGIC KYGPTCRFDH PFMEQSGNYS  180
FGMPMLVDLS PLSYPRSWIA PQGFESSPSS ISSKFPDQVQ KPESEKYQNS ETKVPEESPE  240
QAAGTLPPSP SSSETVQDQS G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304076.11e-173PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLA0A2P6S1X51e-171A0A2P6S1X5_ROSCH; Putative transcription factor C3H family
STRINGXP_004304076.11e-172(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.11e-37zinc finger nuclease 2