PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00006978.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C3H | ||||||||
Protein Properties | Length: 394aa MW: 43825.1 Da PI: 6.432 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25 | 3.4e-08 | 141 | 162 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G+Ck Gd+C FaHg FANhyb_rscf00006978.1.g00001.1 141 SACPDFRK-GHCKKGDSCEFAHG 162 67******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.296 | 89 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-5 | 137 | 163 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.826 | 138 | 164 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 141 | 164 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-6 | 141 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.615 | 172 | 196 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 13 | 172 | 195 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MMLGEPHRPN PTIHVPPWLN LDDPTAEIYS SPYPLSGVSV TSDVTSPNSP YHLNEALATL 60 RRYLPSNEGS DPDPDPYPDS EFDLDPDSPV DAYSCDHFRM FEFKVRRCAR GRSHDWTDCP 120 FAHPGEKARR RDPRKFHYSG SACPDFRKGH CKKGDSCEFA HGVFECWLHP ARYRTQPCKD 180 GTSCKRRVCF FAHTPEQLRV LPQQSPRGSN SVNSSSMESY DGSPMRQAME LAKGMPFLSA 240 SPEISPENSP PMSPMTRSVS RSLGSSSVSE MVASLRNLQL GKVKSLPTTW NVQVGSPGFV 300 SPRGSMLRPG FCSLPSTPTR IPTRSTVGFL EFCDEGCEEE VPMERVESGR DLRAKMFERL 360 REENSLERVD PTLAQGGSSG APDVGWVSEL VNCE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011459526.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | Q9M0G2 | 1e-136 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A2P6RJZ3 | 0.0 | A0A2P6RJZ3_ROSCH; Putative transcription factor C3H family | ||||
STRING | XP_004287502.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-115 | C3H family protein |
Publications ? help Back to Top | |||
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