PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00006545.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 285aa    MW: 32398 Da    PI: 5.3035
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00006545.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS101.51.2e-311283101374
                            GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgv 174
                                     aIlea+ ++ e+vHi+Dfd+++G+Q   +++aLa+R +    l++T+++ ++++     + +  e +++L+k+A+++g+
  FANhyb_rscf00006545.1.g00002.1   1 AILEAIPEDtEMVHIVDFDMGEGMQLSQMIEALAQRLKT---LKVTAIKWEDEEsdcaLQGTFGERKKQLQKLARSFGL 76 
                                     89***988779*************************765...******99888855555556667799*********** PP

                            GRAS 175 pfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl..........sPkvv 239
                                     +++ + +   +l+dl + e++  +    +E +a n++++l ++ ++   ++s   e+L+l k+l          +  +v
  FANhyb_rscf00006545.1.g00002.1  77 SLKVEEV---ALDDL-VAEIKKTRkrglKEFVAFNCMVSLPHMRRR--RSRSLVIEFLRLAKDLlatsgnyktgKTGIV 149
                                     *****97...67777.444433333679************999743..33344569999999984444433333456** PP

                            GRAS 240 vvveqe.adh..nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlek 314
                                     ++ + e  ++  n+ +F   f   l +y al +s+e+++p++  e+r+++E+ +l++ +++    ++ +  +++ +++ 
  FANhyb_rscf00006545.1.g00002.1 150 TFGDGEaFERlgNQLDFSSFFDGNLVHYQALSESIESNFPSHLaEARMVLENIFLAPYVSSQTWFQNWSEMKENSHVQP 228
                                     ******534358999*************************98779**********************999999999999 PP

                            GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                                     W       G++  +ls+++  +ak ++   +s g ++  ++ ++++l W+++pLv vS W+
  FANhyb_rscf00006545.1.g00002.1 229 W------LGLEGRKLSTENLLEAKEIVGDESSYGIKIGgKNGNEMTLEWRENPLVRVSTWE 283
                                     9......7***********************99***9956677888**************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.3E-291283IPR005202Transcription factor GRAS
PROSITE profilePS5098515.1291262IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
AILEAIPEDT EMVHIVDFDM GEGMQLSQMI EALAQRLKTL KVTAIKWEDE ESDCALQGTF  60
GERKKQLQKL ARSFGLSLKV EEVALDDLVA EIKKTRKRGL KEFVAFNCMV SLPHMRRRRS  120
RSLVIEFLRL AKDLLATSGN YKTGKTGIVT FGDGEAFERL GNQLDFSSFF DGNLVHYQAL  180
SESIESNFPS HLAEARMVLE NIFLAPYVSS QTWFQNWSEM KENSHVQPWL GLEGRKLSTE  240
NLLEAKEIVG DESSYGIKIG GKNGNEMTLE WRENPLVRVS TWEKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305115.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2P6R8W11e-174A0A2P6R8W1_ROSCH; Putative transcription factor GRAS family
STRINGXP_004305115.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-14GRAS family protein