PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00006082.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 337aa    MW: 38239.6 Da    PI: 5.7966
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00006082.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.44.8e-52131421129
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                                     lppGfrFhP+deel+ +yL++kv +++++    i++v d++k+ePw+Lp+k+k +ekewy Fs rd+ky+tg r+nrat
  FANhyb_rscf00006082.1.g00001.1  13 LPPGFRFHPSDEELIRYYLHNKVINSNFTS-GPISQVvDLNKCEPWQLPEKAKMGEKEWYMFSLRDQKYPTGLRANRAT 90 
                                     79*************************999.6677666***********99999************************* PP

                             NAM  79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                     k+gyWkatgkd+e++s+ + +l+g+kktLvfy+grapkg++++Wvmheyrle
  FANhyb_rscf00006082.1.g00001.1  91 KAGYWKATGKDREIYSSkSCSLIGMKKTLVFYHGRAPKGVRSNWVMHEYRLE 142
                                     ***************9845567****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-574161IPR003441NAC domain
PROSITE profilePS5100555.17413161IPR003441NAC domain
PfamPF023651.1E-2614141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDLMNLHEYD NQLPPGFRFH PSDEELIRYY LHNKVINSNF TSGPISQVVD LNKCEPWQLP  60
EKAKMGEKEW YMFSLRDQKY PTGLRANRAT KAGYWKATGK DREIYSSKSC SLIGMKKTLV  120
FYHGRAPKGV RSNWVMHEYR LEGLYASQEW NQWILSRVFQ KAMKINGPEC KETRMIGSGR  180
YSAEPSSSSS SSVSLPPLFD SSPYYPTNDS LTDRDSCSHD NRTPMEHVSC FSTNTGTSDD  240
LMTSLDLAPL PQHQTSSLHG FGGLSDFPSS LGSLEENLQL PFLFSQGMQP HQPYYSSTTG  300
SFEFDLGDWS SLGNWRAATA EEPEALAPAE ADYMWTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-461316120168NAC domain-containing protein 19
3swm_B3e-461316120168NAC domain-containing protein 19
3swm_C3e-461316120168NAC domain-containing protein 19
3swm_D3e-461316120168NAC domain-containing protein 19
3swp_A3e-461316120168NAC domain-containing protein 19
3swp_B3e-461316120168NAC domain-containing protein 19
3swp_C3e-461316120168NAC domain-containing protein 19
3swp_D3e-461316120168NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460337.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 2-like
TrEMBLA0A2P6QAJ91e-169A0A2P6QAJ9_ROSCH; Putative transcription factor NAM family
STRINGXP_004295380.11e-168(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36893463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.12e-77NAC family protein