PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00005479.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 297aa    MW: 33180 Da    PI: 6.2387
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00005479.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.9e-131461148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+WT+ Ed  l +++k +G g W+  ++  g++R++k+c++rw++yl
  FANhyb_rscf00005479.1.g00001.1 14 KGAWTALEDRVLSEYIKVHGEGGWRNLPKNAGLKRCGKSCRLRWLNYL 61
                                    79********************************************97 PP
2Myb_DNA-binding53.94.2e-1767111147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     rg+ +++E+el+v+++k+lG++ W++Ia +++ gRt++++k++w++ 
  FANhyb_rscf00005479.1.g00001.1  67 RGNISPDEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                                     7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.427961IPR017930Myb domain
SuperFamilySSF466892.11E-2712108IPR009057Homeodomain-like
SMARTSM007171.5E-101363IPR001005SANT/Myb domain
PfamPF002491.0E-111461IPR001005SANT/Myb domain
CDDcd001676.96E-81661No hitNo description
PROSITE profilePS5129425.38662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2465115IPR009057Homeodomain-like
SMARTSM007174.1E-1666114IPR001005SANT/Myb domain
PfamPF002495.1E-1567112IPR001005SANT/Myb domain
CDDcd001674.92E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRSPCCAKE GLNKGAWTAL EDRVLSEYIK VHGEGGWRNL PKNAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKRVPDQE  120
AHSSSPSSPS SAGHGEPRSN KAKNVMSHNV VRTKAAKCTK VFINPQLPRK GLLLADDHKP  180
EDYHRQQAVV DHQPDGNGLS SPSLLENSSS SDFLMDFDMN SELCLANLLG SEFCGDNLFS  240
EEMQLHQQYW SDNVGSGEDC VADDQFQPTT ILNFQSLNSF LDADANQGDW LELAETS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287618.10.0PREDICTED: myb-related protein Hv1
SwissprotP102903e-60MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A2P6RKJ41e-161A0A2P6RKJ4_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004287618.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-60myb domain protein 12
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]