PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00004820.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HD-ZIP

Protein Properties

Length: 243aa MW: 27321.4 Da PI: 5.7854

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00004820.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.6e-19	91	144	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ F ++++ e++ LAk lgL+ rqV +WFqNrRa++k FANhyb_rscf00004820.1.g00001.1 91 KKRRLTADQVQFLEKSFDLENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWK 144 56689************************************************9 PP
2	HD-ZIP_I/II	128.5	2.7e-41	91	181	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 kkrrl+++qv++LE+sF+ e+kLeperK la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L FANhyb_rscf00004820.1.g00001.1 91 KKRRLTADQVQFLEKSFDLENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQANYNSLKADCDSL 169 9**************************************************************************** PP HD-ZIP_I/II 81 ekeveeLreelk 92 ke+++L++e+ FANhyb_rscf00004820.1.g00001.1 170 CKENDKLKAEVL 181 ******9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.48E-19	78	148	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.633	86	146	IPR001356	Homeobox domain
SMART	SM00389	1.9E-18	88	150	IPR001356	Homeobox domain
CDD	cd00086	3.79E-16	89	147	No hit	No description
Pfam	PF00046	1.8E-16	91	144	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.2E-20	93	154	IPR009057	Homeodomain-like
PRINTS	PR00031	8.9E-5	117	126	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	121	144	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.9E-5	126	142	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.0E-16	146	188	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MAGGGRVYNS SGGASFLLRN QRGSSASEPL DSLFLSGSSN ASSTSPFLGS SMVSFEDVRG 60 GNGLKRSMFH QYEHEDNCDE EFDEYFHQPG KKRRLTADQV QFLEKSFDLE NKLEPERKIL 120 LAKDLGLQPR QVAIWFQNRR ARWKTKQLEK DYDVLQANYN SLKADCDSLC KENDKLKAEV 180 LQLSERLQLK DKERANSEQS DTNKSHQEPQ QMPIAESVSS EGEVSKLSVV ACKEDLSSVV 240 SKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	146	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004299399.1	1e-173	PREDICTED: homeobox-leucine zipper protein HAT5-like
Swissprot	Q02283	2e-43	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBL	A0A2P6P2E7	1e-151	A0A2P6P2E7_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_004299399.1	1e-172	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1500	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-45	homeobox 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]