PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00004702.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 351aa MW: 39743.5 Da PI: 8.4715 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42 | 2.1e-13 | 1 | 38 | 9 | 47 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 d+llvd+v+++ g +Wk Ia+ ++ gR++ qc++rwqk+ FANhyb_rscf00004702.1.g00001.1 1 DKLLVDLVRKFNGSNWKQIAAGIP-GRSDVQCQHRWQKV 38 79**********************.************96 PP | |||||||
2 | Myb_DNA-binding | 56.8 | 5.1e-18 | 45 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd+ ++++v+++G + W+ Ia+ ++ gR +kqc++rw+++l FANhyb_rscf00004702.1.g00001.1 45 KGYWTVEEDDCIIKLVEKYGAR-WSFIAKFLP-GRIGKQCRERWYNHL 90 689*******************.*********.*************97 PP | |||||||
3 | Myb_DNA-binding | 52.2 | 1.4e-16 | 96 | 138 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT++E+ lv +++q+G++ W+ Iar ++ gRt++ +k++w+ FANhyb_rscf00004702.1.g00001.1 96 KDAWTEDEERMLVFYHQQFGNK-WAEIARFLP-GRTDNAIKNHWN 138 689*******************.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-16 | 1 | 52 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-4 | 1 | 41 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.45E-9 | 1 | 39 | No hit | No description |
PROSITE profile | PS51294 | 12.974 | 1 | 39 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.33E-10 | 1 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.9E-11 | 1 | 38 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 28.292 | 40 | 94 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-30 | 42 | 137 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-17 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-17 | 45 | 90 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.21E-14 | 48 | 90 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-25 | 53 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-14 | 95 | 143 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.184 | 95 | 145 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.0E-14 | 96 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.54E-11 | 98 | 138 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 99 | 143 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
DKLLVDLVRK FNGSNWKQIA AGIPGRSDVQ CQHRWQKVVN PEIIKGYWTV EEDDCIIKLV 60 EKYGARWSFI AKFLPGRIGK QCRERWYNHL SPAINKDAWT EDEERMLVFY HQQFGNKWAE 120 IARFLPGRTD NAIKNHWNGA FKRRREDSYS PNGSECHMHT DNACSTELTL EAMCYSLGVK 180 ISGYCKQIAD HTVEDRSFPN SPLVFMDSST FTNSNCTPPK IQYCYSTHPK NVQNVYASST 240 SPKSRLKSLA RTFKNTPSII RKRASRTADH TNSSGANCST AFNILSLGEA CINSTYSNSS 300 DYVRGLSSMR HRRETSEAHK SLGRCLELEF DDENDSGVAN CGEVSSAYVG A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-62 | 1 | 144 | 14 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-62 | 1 | 144 | 14 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300765.1 | 0.0 | PREDICTED: myb-related protein 306-like | ||||
TrEMBL | A0A2P6P7A0 | 0.0 | A0A2P6P7A0_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004300765.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13301 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09370.2 | 1e-65 | myb domain protein 3r-3 |