PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004522.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 675aa    MW: 76561.6 Da    PI: 5.3017
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004522.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.72.4e-1142996732374
                            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseel 78 
                                     ++lL++cA+av+s d+++a++ L+ +++++sp+gd +qRla+y++++L++rl+   s+ +lyk+  + + ++++ ++ l
  FANhyb_rscf00004522.1.g00001.1 299 QTLLTQCAQAVASFDKRNATEQLKLIRQHSSPYGDGTQRLAHYMANGLEERLTAavSSVSLYKQSVCFSRTNMSAADIL 377
                                     689**************************************************955566789999999999999***** PP

                            GRAS  79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..sk 155
                                     +a++++  ++P+ k+s++ aN++I++ +e+++r+HiiDf+i +G QWp+L+qaL++Rp+gpp +RiTg++ p+sg   +
  FANhyb_rscf00004522.1.g00001.1 378 KAYQTYITACPFKKMSNFYANRTIVKLAEKATRLHIIDFGILYGYQWPCLIQALSKRPGGPPIVRITGIEFPQSGfrPS 456
                                     **************************************************************************9**** PP

                            GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234
                                     e+leetg+rL+++++++ vpf++++ vak++e++++e+++++++E+++Vn++ +l++l+ +++ l+s+rd+vLkl++++
  FANhyb_rscf00004522.1.g00001.1 457 ERLEETGRRLQNYCKRFSVPFQYTA-VAKNWETIQYEDIKIDRDEMTVVNCMDRLKNLP-DDAVLDSPRDTVLKLIRRI 533
                                     *************************.8*******************************9.77778888*********** PP

                            GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313
                                     +P+v+++   +  +n++ F +rf eal+++s+lfd++e++l re+++r   E+e++gr++ nvvaceg++r er et++
  FANhyb_rscf00004522.1.g00001.1 534 NPDVFIHGIVNGTYNAPFFDTRFREALYHFSSLFDMFEETLLREDQQRLLFEQEIFGRDLINVVACEGSMRLERPETYK 612
                                     ******************************************************************************* PP

                            GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     +W+ r ++aGFk++pl++++ k+++++++  + + + v+e+  ++++gWk+r + ++S+W+
  FANhyb_rscf00004522.1.g00001.1 613 QWQIRNKRAGFKQLPLDQDILKKVRTMVKSEYHKDFVVDEDGRWVLQGWKGRIIQAISCWK 673
                                     ******************************99888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.043272653IPR005202Transcription factor GRAS
PfamPF035148.2E-112299673IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MNNFMFDQSS IPSFPDHNPP DQFEANHELT NLSFSPANSY PYSDFSPSSS SGLSSEGVNS  60
PDDSNTILRF ISEMLMQEED LENKPCMLQD CLALRAAEKS LYDVLVQEDP SSTSQNLTST  120
YQNVGSPDDV SNHSSSSSHA ASNWVDSDFD CVQEVLDTVI PNPFVSNGKG GVTDLEGNSS  180
FPADARQLSS DVNFSPDKGE SESRNGSRSK KNRYREDGDY VDEERSYKQS AVYADEAEPE  240
EIFDQVLLCQ GDKSRSSPQL SELQDGNGKL QRNGKAKGSK AKKTGKKKPD DNKEMVDLQT  300
LLTQCAQAVA SFDKRNATEQ LKLIRQHSSP YGDGTQRLAH YMANGLEERL TAAVSSVSLY  360
KQSVCFSRTN MSAADILKAY QTYITACPFK KMSNFYANRT IVKLAEKATR LHIIDFGILY  420
GYQWPCLIQA LSKRPGGPPI VRITGIEFPQ SGFRPSERLE ETGRRLQNYC KRFSVPFQYT  480
AVAKNWETIQ YEDIKIDRDE MTVVNCMDRL KNLPDDAVLD SPRDTVLKLI RRINPDVFIH  540
GIVNGTYNAP FFDTRFREAL YHFSSLFDMF EETLLREDQQ RLLFEQEIFG RDLINVVACE  600
GSMRLERPET YKQWQIRNKR AGFKQLPLDQ DILKKVRTMV KSEYHKDFVV DEDGRWVLQG  660
WKGRIIQAIS CWKSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-472986735375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461324.10.0PREDICTED: scarecrow-like protein 11
TrEMBLA0A2P6QJ110.0A0A2P6QJ11_ROSCH; Putative transcription factor GRAS family
STRINGXP_004295970.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-174GRAS family protein