PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00004460.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HRT-like

Protein Properties

Length: 477aa MW: 52928.8 Da PI: 9.554

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00004460.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	60.3	3.1e-19	307	336	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCGv+ +dGs+C+r+Pv+gRKRC+eHKGmR FANhyb_rscf00004460.1.g00001.1 307 ICGVAAGDGSTCRRPPVQGRKRCAEHKGMR 336 8***************************** PP
2	HRT-like	50.7	3.1e-16	362	391	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++ +dGs+C+ +Pv+gR RC+ HKGmR FANhyb_rscf00004460.1.g00001.1 362 ICGLAAGDGSTCRIPPVPGRVRCAMHKGMR 391 8***************************** PP
3	HRT-like	55.4	9.9e-18	417	446	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCGv+ ++Gs+C+r+Pv+gR RC+ HKGmR FANhyb_rscf00004460.1.g00001.1 417 ICGVTADNGSICRRPPVPGRVRCAMHKGMR 446 8***************************** PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MPVILELEDE VPPMVSNVFT LAVQRLKREE CNRTKLDSQF SNWKVIVGPC DWEDYSVGKD 60 GAERYRVHNL PEYESPGVYE LAVAVSPSGL GRGIKADQIV PVYVGQADSA RTRLQHYGRR 120 GAHLGKSCSV GNGSELICKG PGLFEEMLAR GYTIVYRWAP MRTKNEALRT ERKLLDTFDY 180 AWNRNSNVSR RHDDVLQKLK KISSKSTRFT TTVPRHLPFR QKQVSIRINS SNLISTEKKF 240 SDYTDKESRN LIPQVIKFGR SQPRKAPVQG RKRCAAHKGI KNTGSTTDSN RELVSFESGI 300 TWENTEICGV AAGDGSTCRR PPVQGRKRCA EHKGMRNAES ITASTGELVT YNSGVTLENT 360 EICGLAAGDG STCRIPPVPG RVRCAMHKGM RNTESSTASN IEFFPYVSGN TRENTEICGV 420 TADNGSICRR PPVPGRVRCA MHKGMRNTES STASNIEFFS YISGNTRENT EICGVTA

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MPVILELEDE VPPMVSNVFT LAVQRLKREE CNRTKLDSQF SNWKVIVGPC DWEDYSVGKD  60
GAERYRVHNL PEYESPGVYE LAVAVSPSGL GRGIKADQIV PVYVGQADSA RTRLQHYGRR  120
GAHLGKSCSV GNGSELICKG PGLFEEMLAR GYTIVYRWAP MRTKNEALRT ERKLLDTFDY  180
AWNRNSNVSR RHDDVLQKLK KISSKSTRFT TTVPRHLPFR QKQVSIRINS SNLISTEKKF  240
SDYTDKESRN LIPQVIKFGR SQPRKAPVQG RKRCAAHKGI KNTGSTTDSN RELVSFESGI  300
TWENTEICGV AAGDGSTCRR PPVQGRKRCA EHKGMRNAES ITASTGELVT YNSGVTLENT  360
EICGLAAGDG STCRIPPVPG RVRCAMHKGM RNTESSTASN IEFFPYVSGN TRENTEICGV  420
TADNGSICRR PPVPGRVRCA MHKGMRNTES STASNIEFFS YISGNTRENT EICGVTA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011459781.1	0.0	PREDICTED: uncharacterized protein LOC101314891 isoform X3
TrEMBL	A0A2P6RK45	0.0	A0A2P6RK45_ROSCH; Putative transcription factor HRT family
STRING	XP_004288923.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9409	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-80	effector of transcription2