PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004310.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 513aa    MW: 56759.2 Da    PI: 8.5385
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004310.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.91.1e-242102399
                                     EE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                              B3   3 kvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                     k+ltpsd+++ g +++p+ +a+++        +++ +  tl+++d++g +W++++iyr++++r++lt+GW++Fv+++ L
  FANhyb_rscf00004310.1.g00001.1   2 KILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLSVTDLHGVVWDFRHIYRGTPRRHLLTTGWSKFVNSKML 78 
                                     89*******************999****985444444..9*************************************** PP

                                     -TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  75 kegDfvvFkldgrsefelvvkvfrk 99 
                                      +gD+vvF++++ +++e++v+v+r+
  FANhyb_rscf00004310.1.g00001.1  79 VAGDSVVFMRNS-RGGEMYVGVRRT 102
                                     *********654.8999*****996 PP
2Auxin_resp92.38.1e-31145228183
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSk 78 
                                     aa+ a+++++FevvY+P+a++++Fvvk+e vekal+v +++GmR+kma+et+dss+ ++ +Gt ++v   ++  W++S+
  FANhyb_rscf00004310.1.g00001.1 145 AAEMAAQEMPFEVVYYPKAGWADFVVKAEVVEKALNVFWTAGMRVKMAMETDDSSRMTWfQGTLSSVFVPESGPWKGSP 223
                                     68899************************************************************************** PP

                      Auxin_resp  79 WrsLk 83 
                                     Wr+L+
  FANhyb_rscf00004310.1.g00001.1 224 WRMLQ 228
                                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.281103IPR003340B3 DNA binding domain
CDDcd100171.19E-202101No hitNo description
SuperFamilySSF1019361.44E-282120IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.2E-172103IPR003340B3 DNA binding domain
PfamPF023623.7E-222102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-332106IPR015300DNA-binding pseudobarrel domain
PfamPF065078.6E-28145228IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
AKILTPSDAN NGGGFSVPRF CADSIFPPLN YQAEPPVQTL SVTDLHGVVW DFRHIYRGTP  60
RRHLLTTGWS KFVNSKMLVA GDSVVFMRNS RGGEMYVGVR RTVRASPGGD CGRWSSHIGL  120
KSSSEEGSGG DGFKTKLSAE AVVEAAEMAA QEMPFEVVYY PKAGWADFVV KAEVVEKALN  180
VFWTAGMRVK MAMETDDSSR MTWFQGTLSS VFVPESGPWK GSPWRMLQVT WDEPEVLQKA  240
KRVSPWQVDF VASTPSLHPA PPFHTVYPLT KRFRAPLNPT LLRNGEEEFM IPMTGAANST  300
MGQYNASMLN YNIFPAGMQG ARQDLFCDSN ASHLFNESTS RMWTYNSFGN NMAPSLKRVS  360
TELNIGSPQS DQLSPDSQSS PQSFCTEPDG NRNCNSRKVR RSSFQLFGQT IPINDIDAVG  420
CTGDGGNIGY NETELLNNPL DSYTKLLERI DVRVSAVEAC TLFSSLQKLI RSVDRCTSVM  480
SVFWSRAGIA KKKPSDSFRR ATLLKPESFK SSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-521249159388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024174267.10.0auxin response factor 17
SwissprotQ84WU61e-137ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A2P6PI060.0A0A2P6PI06_ROSCH; Auxin response factor
STRINGXP_004301788.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-122auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]