PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00004038.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 654aa MW: 74800.4 Da PI: 6.0524

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00004038.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	345.4	9.7e-106	284	652	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 lL++cA+av s d + a++ L+ +++++sp+gd +qRla+y++++L++rl+ ly+ + + +++ ++ l+a++ FANhyb_rscf00004038.1.g00001.1 284 LLTQCAKAVISYDIRPANEKLKLIRQHSSPHGDGTQRLAHYLANGLEERLNA-AVPLYNPH-CLFSCKMSAADILKAYQ 360 79***********************************************9.55566543.444444679**** PP GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeele 159 ++ +++P+ +s++ aN++Il+ +e+ +r+HiiDf+i +G QWp+L+q La +p+gpp+l iT ++ p+sg + +le FANhyb_rscf00004038.1.g00001.1 361 TYMKACPFKMMSNIYANNTILKLAENVTRLHIIDFGILYGYQWPCLIQMLARKPSGPPMLHITDIEFPQSGlqPSGRLE 439 ******************************************************************99999 PP GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238 etg+ Lak++++++v+f++n+ +a+++e++++e+++++++E ++Vn+ ++l++l+ ++++++s+rd+vLkl+++++P++ FANhyb_rscf00004038.1.g00001.1 440 ETGNCLAKYCKRFNVSFKYNF-IAQSWETIQYEDIKLDRDELTVVNCLYRLKNLP-DETEINSPRDTVLKLIRRINPEM 516 *****************.7***************************9.77788889*********** PP GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317 +++ + +n++ F rf e+l+++s+lfd++e++lpre+++r +E+e++gr+i nv+aceg++r er et+++W+ FANhyb_rscf00004038.1.g00001.1 517 FIHGVVNGTYNAPFFDIRFRETLYHFSSLFDMFEETLPREDQQRLLYEQEVFGRDIINVIACEGSRRLERPETYKQWQI 595 *************************************************************************** PP GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r ++aGFk++pl+++ +++k ++r + + + v+e+ ++l++gWk+r L ++S+W+ FANhyb_rscf00004038.1.g00001.1 596 RNTRAGFKQLPLNQELLMKVKNMVRLGYHEDFVVNEDGKWLLQGWKGRILHAISCWK 652 ************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.627	255	632	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-103	284	652	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence Send to blast
FSVQNTLVTE SESDQHNHEL SDPSFFPSNP NPPPHDSSSS LDLSSEGEYY SPSSATLQYI 60 SQMLMEEELE NTPCMLQDCL ALQAAEKSLH DLIQQYPSST TNLLASSIHQ TAEISEDLMN 120 HSSNSSTAAR EWNDGSGWIS FQNVLESHPL ENNTLLVPNP FSSNGKGGIL DLERCSSFLK 180 QPREVTEDGN DSTNRSRSKK DRQQEDGGYQ EEGRSNKQTA FYAAETEPPE MLDKVLLCQY 240 QISCSSLQES DQLKRASGHR GFKGKRTGKK MVDDNRAVVD FQILLTQCAK AVISYDIRPA 300 NEKLKLIRQH SSPHGDGTQR LAHYLANGLE ERLNAAVPLY NPHCLFSCKM SAADILKAYQ 360 TYMKACPFKM MSNIYANNTI LKLAENVTRL HIIDFGILYG YQWPCLIQML ARKPSGPPML 420 HITDIEFPQS GLQPSGRLEE TGNCLAKYCK RFNVSFKYNF IAQSWETIQY EDIKLDRDEL 480 TVVNCLYRLK NLPDETEINS PRDTVLKLIR RINPEMFIHG VVNGTYNAPF FDIRFRETLY 540 HFSSLFDMFE ETLPREDQQR LLYEQEVFGR DIINVIACEG SRRLERPETY KQWQIRNTRA 600 GFKQLPLNQE LLMKVKNMVR LGYHEDFVVN EDGKWLLQGW KGRILHAISC WKSA

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence Send to blast

FSVQNTLVTE SESDQHNHEL SDPSFFPSNP NPPPHDSSSS LDLSSEGEYY SPSSATLQYI  60
SQMLMEEELE NTPCMLQDCL ALQAAEKSLH DLIQQYPSST TNLLASSIHQ TAEISEDLMN  120
HSSNSSTAAR EWNDGSGWIS FQNVLESHPL ENNTLLVPNP FSSNGKGGIL DLERCSSFLK  180
QPREVTEDGN DSTNRSRSKK DRQQEDGGYQ EEGRSNKQTA FYAAETEPPE MLDKVLLCQY  240
QISCSSLQES DQLKRASGHR GFKGKRTGKK MVDDNRAVVD FQILLTQCAK AVISYDIRPA  300
NEKLKLIRQH SSPHGDGTQR LAHYLANGLE ERLNAAVPLY NPHCLFSCKM SAADILKAYQ  360
TYMKACPFKM MSNIYANNTI LKLAENVTRL HIIDFGILYG YQWPCLIQML ARKPSGPPML  420
HITDIEFPQS GLQPSGRLEE TGNCLAKYCK RFNVSFKYNF IAQSWETIQY EDIKLDRDEL  480
TVVNCLYRLK NLPDETEINS PRDTVLKLIR RINPEMFIHG VVNGTYNAPF FDIRFRETLY  540
HFSSLFDMFE ETLPREDQQR LLYEQEVFGR DIINVIACEG SRRLERPETY KQWQIRNTRA  600
GFKQLPLNQE LLMKVKNMVR LGYHEDFVVN EDGKWLLQGW KGRILHAISC WKSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-40	285	652	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011461323.1	0.0	PREDICTED: scarecrow-like protein 11
TrEMBL	M5W391	0.0	M5W391_PRUPE; Uncharacterized protein
STRING	XP_004295970.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-162	GRAS family protein