PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00003760.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 295aa MW: 32522.6 Da PI: 5.0046

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00003760.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	24.3	8e-08	115	137	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H FANhyb_rscf00003760.1.g00001.1 115 HYCEICGKGFKRDANLRMHMRAH 137 68*******************99 PP
2	zf-C2H2	11	0.0014	177	200	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs +Lk+H++ + FANhyb_rscf00003760.1.g00001.1 177 YSCNRCNkKSFSVVADLKSHLKHC 200 99*******************977 PP
3	zf-C2H2	13.6	0.00019	208	224	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrks L H+ FANhyb_rscf00003760.1.g00001.1 208 TCGTSFSRKSKLFGHMA 224 6**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.19E-6	112	138	No hit	No description
PROSITE profile	PS50157	12.133	115	142	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.002	115	137	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.8E-6	115	137	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12874	4.3E-4	116	135	No hit	No description
PROSITE pattern	PS00028	0	117	137	IPR007087	Zinc finger, C2H2
SMART	SM00355	13	177	199	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	230	205	229	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MPEDPDPRVP LQNLDTVRTR MDSLQLFLTQ SINNNTLISQ HQMDLVSAGI SSAIHEIISN 60 GAALLACSRN PRPGPDPTRV PEVVKKEEET NNEENGADSE IVEVDAVELL AEHVHYCEIC 120 GKGFKRDANL RMHMRAHGNQ FKTPEALAKP EKVATGGGEV VTGHAVLVPR SHCPKMYSCN 180 RCNKKSFSVV ADLKSHLKHC GEARWRCTCG TSFSRKSKLF GHMALFEGHM PAVEDEKAPG 240 NGAVTAMEED EGNMMEFNGE GSNPIFDDID DFSDQLFSGF GSMDGFRLED MFVDL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:23935008}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011465484.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
Swissprot	Q0WT24	2e-51	STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBL	A0A2P6RQD8	1e-148	A0A2P6RQD8_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004288188.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6855	31	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	8e-53	C2H2 family protein