PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00003354.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HRT-like

Protein Properties

Length: 473aa MW: 53120.7 Da PI: 9.8085

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00003354.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	57.2	2.7e-18	278	308	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+ +dG+ C++ Pv+gRKRC+eHKGmRi FANhyb_rscf00003354.1.g00001.1 278 VCGVAVGDGTLCRKAPVQGRKRCAEHKGMRI 308 7*****************************7 PP
2	HRT-like	60	3.6e-19	347	377	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+ +dGs+C+++Pv+gRKRC+eHKGmRi FANhyb_rscf00003354.1.g00001.1 347 ICGVAVGDGSICRTPPVHGRKRCAEHKGMRI 377 8*****************************7 PP
3	HRT-like	50.2	4.3e-16	426	456	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il dGs+C+++P++ +KRC +HKG+Ri FANhyb_rscf00003354.1.g00001.1 426 ICGFILADGSPCRTEPIQRKKRCDKHKGRRI 456 8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MVASDFTALL PRLKREECKR TKHDSHFSNW KVLVGPSDWE DYWLGKEGAE RYRVYNLPRD 60 ESPGVYELGV AVSRSGLGRG VEADRIVPVY LGQADSVRTR LQQYGRTGAH LGKCCSSERI 120 RKGPGLFEEM LGRGYPIVYR WAPIHPGECC ACHYEILQFM ETKSNALKTE SQLLNTFDYA 180 WNTSINGARR PDDVLQRLKK ISSKPTRFTN IVQRLLPFSQ KQVCIRINSS KLVSKEEKFS 240 GYTDRENLNL IAQVFKFGRS QPRLVVDRSG ISQENTIVCG VAVGDGTLCR KAPVQGRKRC 300 AEHKGMRITG SITVKISNSN IGSKCSVISN REFVSDESGI TQENTIICGV AVGDGSICRT 360 PPVHGRKRCA EHKGMRIKES ITVRVSEKYV DSKFSNKELD SHDASNVKYE QVKLPPVHVR 420 ESSTSICGFI LADGSPCRTE PIQRKKRCDK HKGRRIQKSN STSVKEEKVE ICA

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MVASDFTALL PRLKREECKR TKHDSHFSNW KVLVGPSDWE DYWLGKEGAE RYRVYNLPRD  60
ESPGVYELGV AVSRSGLGRG VEADRIVPVY LGQADSVRTR LQQYGRTGAH LGKCCSSERI  120
RKGPGLFEEM LGRGYPIVYR WAPIHPGECC ACHYEILQFM ETKSNALKTE SQLLNTFDYA  180
WNTSINGARR PDDVLQRLKK ISSKPTRFTN IVQRLLPFSQ KQVCIRINSS KLVSKEEKFS  240
GYTDRENLNL IAQVFKFGRS QPRLVVDRSG ISQENTIVCG VAVGDGTLCR KAPVQGRKRC  300
AEHKGMRITG SITVKISNSN IGSKCSVISN REFVSDESGI TQENTIICGV AVGDGSICRT  360
PPVHGRKRCA EHKGMRIKES ITVRVSEKYV DSKFSNKELD SHDASNVKYE QVKLPPVHVR  420
ESSTSICGFI LADGSPCRTE PIQRKKRCDK HKGRRIQKSN STSVKEEKVE ICA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024181854.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like isoform X2
TrEMBL	A0A2P6RK91	0.0	A0A2P6RK91_ROSCH; Putative transcription factor HRT family
STRING	XP_004288924.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9409	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	8e-90	effector of transcription2