PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003065.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 503aa    MW: 54867.6 Da    PI: 7.6026
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003065.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-17159208155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  FANhyb_rscf00003065.1.g00001.1 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 208
                                     78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-9159208IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-15159217IPR016177DNA-binding domain
PROSITE profilePS5103217.385160216IPR001471AP2/ERF domain
SMARTSM003808.1E-31160222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-16160216IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-6251323IPR016177DNA-binding domain
CDDcd000181.08E-13251323No hitNo description
SMARTSM003802.4E-9252327IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-5252322IPR001471AP2/ERF domain
PROSITE profilePS5103211.034252321IPR001471AP2/ERF domain
PRINTSPR003674.7E-6253264IPR001471AP2/ERF domain
PRINTSPR003674.7E-6303323IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
DLNLSAVGSS EQDDVVVVGS AHGMFPEGSG SATQMDESGT SNSSVVNADA SSTNDDSCSA  60
RAAVTTLNFD ILKVGGGDEE EEDDVVVTKE LFPVNSWPGT GQQYSPASSS ARQSLIELGF  120
NHGGPPAEVR LVQQKQPQPP PPPPPQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC  180
GKQVYLGGFD TAHAAARAYD RAAIKFRGVD ADINYNLSDY EEDMKQMKNL TKEEFVHILR  240
RQSTGFSRGS SRYRGVTLHK CGRWEARMGQ FLGKKMSLSA YFKEKELWAW WFIVGVMMLA  300
CRAYDKAAIK CNGKEAVTNF EASIYEGEMI SDAGNEDGNH NLDLNLGISP LHLVVIKSKA  360
RGSFSSILAL VRGKMERIRG TLTLQMEPNA NATMNPPPFN GVIMTSEHPS LWNGVYPNFF  420
PNQERATEKR IALGSQGPPN WAWQMHGQVS ASPMPLFSTA ASSGFSFTAT TPSAAVLPLI  480
PSNPAALNLC FTSSATAAHL TPQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461366.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ9SK031e-109RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A3S8T9550.0A0A3S8T955_FRAAN; Transcription factor AP217
STRINGXP_004295997.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.35e-96related to AP2.7