PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003049.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 277aa    MW: 31138 Da    PI: 8.2327
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003049.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-18129183256
                                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  FANhyb_rscf00003049.1.g00001.1 129 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLSLRPRQVEVWFQNRRARTK 183
                                     788899***********************************************98 PP
2HD-ZIP_I/II125.13.2e-40129218191
                     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 
                                     +kk+rl+keq++lLEesF+++++L+p++K++lar+L l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en+r
  FANhyb_rscf00003049.1.g00001.1 129 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLSLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTDENRR 207
                                     69***************************************************************************** PP

                     HD-ZIP_I/II  80 LekeveeLreel 91 
                                     L+kev+eL+ +l
  FANhyb_rscf00003049.1.g00001.1 208 LQKEVQELK-AL 218
                                     ********9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-17111183IPR009057Homeodomain-like
SuperFamilySSF466892.05E-18120186IPR009057Homeodomain-like
PROSITE profilePS5007117.443125185IPR001356Homeobox domain
SMARTSM003893.9E-15127189IPR001356Homeobox domain
PfamPF000467.0E-16129183IPR001356Homeobox domain
CDDcd000863.99E-16129186No hitNo description
PROSITE patternPS000270160183IPR017970Homeobox, conserved site
PfamPF021832.6E-10185219IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.9E-23185230IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGFDDQHACN TGLVLGLGLT ASQYSTSTPT PQKAQHPMMN KKPDSFEPSL TLGLFGNSFH  60
EDDHHQGNNS LDLYRQGSPH NSHSAVSNSF SSGRVVKRER DISSEEVEVE KQVSCRVISD  120
EDEDGPNARK KLRLTKEQSA LLEESFKQHS TLNPKQKQAL ARQLSLRPRQ VEVWFQNRRA  180
RTKLKQTEVD CELLKKCCET LTDENRRLQK EVQELKALKL SQQQPLFMHM PAATLTMCPS  240
CERIGGSEGA NSNKSPFSIA HLKPHFYNPF TNSSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177185RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288289.10.0PREDICTED: homeobox-leucine zipper protein HAT9-like
SwissprotP466041e-93HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2P6RPG90.0A0A2P6RPG9_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004288289.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-93HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]