PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002886.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 421aa    MW: 48075.5 Da    PI: 6.4092
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002886.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-19189239256
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  FANhyb_rscf00002886.1.g00001.1 189 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 239
                                     59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.19E-33188248No hitNo description
Gene3DG3DSA:3.30.730.103.4E-32189247IPR001471AP2/ERF domain
PROSITE profilePS5103222.998189246IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-23189247IPR016177DNA-binding domain
SMARTSM003801.5E-40189252IPR001471AP2/ERF domain
PRINTSPR003677.1E-11190201IPR001471AP2/ERF domain
PfamPF008472.4E-12190239IPR001471AP2/ERF domain
PRINTSPR003677.1E-11212228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAAAKRSGES NFETQMETSK DCDLDKGKEH DFLLEGHQWK PVFDEAPVSN RPLKKIKSPE  60
RSHQHRSSAF SLNFKSHLLL LLVQQQQQPI QFPRQFHSTG LQPNQFPPNT HVVEQQQQQN  120
QQQMISFASQ QQHMISWQQH QQQQMLQYWS DALNLSPRGR MMMMMNRFGG ANSSGGIRSP  180
AMPISTTKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD TAEDAAMAYD REAFKLRGEN  240
ARLNFPELFL NKEKHNDNTA AVSAAAPIQQ VSKPLRSQGM QQLKNLDLQL QVPISDNETV  300
APPPAPYAQP QEDDDTSHQL EVENHGERGG IMSDAPTQEM VWGEMAEAWL NAIPQGWGPG  360
SPVWDDLELD MTSNNLVLPS HDHNGFTANN SNRHDFPQQD DNSCSASSSY PMQPFFWKDQ  420
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-21188246160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466891.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A3S8T8Z70.0A0A3S8T8Z7_FRAAN; Transcription factor ERF1
STRINGXP_004305415.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-53ERF family protein