PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002773.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 376aa    MW: 40656.4 Da    PI: 4.4435
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002773.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind82.18.4e-262987260
                                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
                    HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                                    Fl+k+ye++ed+e +eliswse g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+Y
  FANhyb_rscf00002773.1.g00001.1 29 FLTKTYELVEDPEADELISWSEGGSTFVVWRPAEFARDILPKYFKHNNFSSFVRQLNTY 87
                                    9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.7E-272187IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.1E-2325122IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.98E-232687IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-212987IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-152952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-156779IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-158092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MASLPDQNGD SGPSGGGGRE SQRTIPTPFL TKTYELVEDP EADELISWSE GGSTFVVWRP  60
AEFARDILPK YFKHNNFSSF VRQLNTYILL IACISICFDF NSLFLVWISG IPEGCTGSVG  120
VRERLLQKRG ERTPPGDSAP ENLSVGVRFR RDGGCGSCCY SGDAACGGGL GVPANSGDEH  180
VISSNSSPMA VPTPVPAVTL LQRARSCNST AEILEENERL RKENMQLSNE LTQLRGLCNN  240
ILGMMTNYAS GQLARGGGAV ADDKPPPPPL HSVKISQGGE NAAVSRGDMA GDSAEDEMEE  300
DQEEETPLPL ALPLRPIPTA KLFGVSLGVK RPRRDDEEEG EDQERQNQGC DEVVKQEPSD  360
GSSKLEKEGT WLELRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-184871487Heat shock factor protein 1
5d5v_B2e-184871487Heat shock factor protein 1
5d5v_D2e-184871487Heat shock factor protein 1
5hdg_A1e-1829871068Heat shock factor protein 1
5hdn_A1e-1829871068Heat shock factor protein 1
5hdn_B1e-1829871068Heat shock factor protein 1
5hdn_C1e-1829871068Heat shock factor protein 1
5hdn_D1e-1829871068Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300764.11e-101PREDICTED: heat stress transcription factor B-2b
RefseqXP_011463820.11e-101PREDICTED: heat stress transcription factor B-2b
RefseqXP_011463821.11e-101PREDICTED: heat stress transcription factor B-2b
RefseqXP_011463822.11e-101PREDICTED: heat stress transcription factor B-2b
RefseqXP_011463823.11e-101PREDICTED: heat stress transcription factor B-2b
TrEMBLA0A1B0VC601e-103A0A1B0VC60_FRAVE; Heat shock factor B2b
STRINGXP_004300764.11e-100(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-42heat shock transcription factor B2A