PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002649.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 276aa    MW: 31357.2 Da    PI: 9.245
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002649.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.93.5e-151148340
                                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                                    i++++ r+ +f kR+ g++KK +EL +LCd+ v+++i+
  FANhyb_rscf00002649.1.g00003.1 11 IDSERARKASFNKRKDGLMKKVSELQTLCDVHVCIVIY 48
                                    899*********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.582148IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-14160IPR002100Transcription factor, MADS-box
CDDcd002661.49E-22383No hitNo description
PRINTSPR004045.1E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-20391IPR002100Transcription factor, MADS-box
PfamPF003194.8E-181158IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MPRARVKLAL IDSERARKAS FNKRKDGLMK KVSELQTLCD VHVCIVIYDR GSNEPFVWPN  60
RPKVEELIKR YLRLPGFMRL KKALCQERYL KKEKVEKMQE KNNIILRSNT AEEMVELMHQ  120
NQNGKPIYGL DLYQTYALLN FLEAKMKEIQ IQIAFFEQAS AQSETANKLG VPMGNSMEWP  180
YKILGVDNDR CGNGNELGFQ IAPMLCNEGG VVGLPHVKYF RNKITGNIGN QMGYFGMLSQ  240
YYGDNVTTSA GSITGWGIES TNEANITGEI NVARFP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301699.11e-141PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A2P6P9U81e-108A0A2P6P9U8_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004301699.11e-140(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.17e-21AGAMOUS-like 36