PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00002566.1.g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26165.5 Da PI: 8.9303 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.4 | 1.6e-22 | 20 | 67 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i +n qvtfskRr g++KKA+EL++LC++eva+i+fs+ +k y + FANhyb_rscf00002566.1.g00002.1 20 KIAKRTNLQVTFSKRRSGLFKKASELCTLCGVEVAIIVFSPANKPYSF 67 577899*************************************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-31 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.773 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.72E-27 | 12 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.12E-33 | 12 | 80 | No hit | No description |
PRINTS | PR00404 | 7.2E-18 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-25 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-18 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-18 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MTMKKSNRSS QGRQKIPIAK IAKRTNLQVT FSKRRSGLFK KASELCTLCG VEVAIIVFSP 60 ANKPYSFGHP DVDSLIDRFL ARNPNFNMSL ADSCQQLGEA HKKATAHELN MQLTRISNQV 120 ETERKLGESL DKMSKASECW WENPVDELGL DELRILQAAL EELKKNVNEQ TNRIWMESSN 180 TTSIANNSSS FFMTNNGHHL SKNSSPRSDQ VGSDYNDIPR AYDFGFAGNI GLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 4e-15 | 12 | 83 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_B | 4e-15 | 12 | 83 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_I | 4e-15 | 12 | 83 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_J | 4e-15 | 12 | 83 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_A | 4e-15 | 12 | 83 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_B | 4e-15 | 12 | 83 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_C | 4e-15 | 12 | 83 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_D | 4e-15 | 12 | 83 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_I | 4e-15 | 12 | 83 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_J | 4e-15 | 12 | 83 | 1 | 72 | Myocyte-specific enhancer factor 2A |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004292056.1 | 1e-169 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 1e-55 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2P6PJW3 | 1e-147 | A0A2P6PJW3_ROSCH; Putative transcription factor MADS-type1 family | ||||
STRING | XP_004292056.1 | 1e-169 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-57 | AGAMOUS-like 61 |
Publications ? help Back to Top | |||
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