PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002302.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 275aa    MW: 30457.2 Da    PI: 7.7292
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002302.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.4e-141259148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+WT+ Ed+ l  ++k +G g W+  +++ g++R++k+c++rw++yl
  FANhyb_rscf00002302.1.g00001.1 12 RGAWTALEDKVLTSYIKAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 59
                                    89********************************************97 PP
2Myb_DNA-binding48.61.9e-1565109147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
  FANhyb_rscf00002302.1.g00001.1  65 RGNISGDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 109
                                     6777889***************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-22362IPR009057Homeodomain-like
PROSITE profilePS5129414.28759IPR017930Myb domain
SuperFamilySSF466893.4E-2710106IPR009057Homeodomain-like
SMARTSM007172.2E-111161IPR001005SANT/Myb domain
PfamPF002491.3E-121259IPR001005SANT/Myb domain
CDDcd001678.73E-91459No hitNo description
PROSITE profilePS5129423.91460114IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2363113IPR009057Homeodomain-like
SMARTSM007175.6E-1564112IPR001005SANT/Myb domain
PfamPF002491.4E-1365109IPR001005SANT/Myb domain
CDDcd001671.48E-1169110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
RSPCCSKEGL NRGAWTALED KVLTSYIKAH GEGKWRNLPK RAGLKRCGKS CRLRWLNYLR  60
PDIKRGNISG DEEELIIRLH NLLGNRWSLI AGRLPGRTDN EIKNYWNTTL AKKAKPESHS  120
RSSKETSPGP TRFRPRKASA AATTQPQVIR TKATRLTRMP VPSLPLLIDD CSTSTTALEL  180
QVPQTQLVSS LPEDAVDTQV YFQGTDAMNF GCNGFQATAG DDEDAKGDYD IPLDDGMLND  240
WTGNGNCDLE NYGASLDLDS LAFLLDSDDW LGQGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-251011425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303468.10.0PREDICTED: transcription factor TT2-like
TrEMBLI3WCS20.0I3WCS2_FRAAN; Transcription factor MYB9
STRINGXP_004303468.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.17e-63MYB family protein
Publications ? help Back to Top
  1. Schaart JG, et al.
    Identification and characterization of MYB-bHLH-WD40 regulatory complexes controlling proanthocyanidin biosynthesis in strawberry (Fragaria
    New Phytol., 2013. 197(2): p. 454-67
    [PMID:23157553]