PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002006.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 301aa MW: 33432.3 Da PI: 4.644

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002006.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.4	6.4e-38	36	92	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++s+ FANhyb_rscf00002006.1.g00002.1 36 PNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRSR 92 58***************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	28	90	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-32	36	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.668	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MFTAPVLEQM LQCQSGQPLI MNSQKPSWKP HVEIAPNCPR CASSNTKFCY YNNYSLSQPR 60 YFCKGCRRYW TKGGSLRNVP VGGGCRKNRR SRSARLSQAD RISMSYYRRD SSSSSGDDLS 120 EQHSKEGANG SDIDMAAVFA NFLNQNSSNG HDPNLVGSES IPDDVHDANA LSDHSQNSSN 180 PAEDLLESVE LLQGLVLPDH DLQQSHEEDN IHNVMGNHQS HQDLSIHEFG LQGLLDDEDV 240 FWSDTTASLT SNTTSFNWQE LDNSFPSDDD DHMKISTTTT NLCSENWSSF DFSGLGVFSG 300 S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004292540.1	0.0	PREDICTED: dof zinc finger protein DOF1.2
TrEMBL	A0A1D6WJM1	0.0	A0A1D6WJM1_FRAAN; ZnF-Dof-type transcription factor
STRING	XP_004292540.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	1e-45	Dof family protein