PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001667.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | YABBY | ||||||||
Protein Properties | Length: 94aa MW: 10420.6 Da PI: 8.2318 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 50.5 | 8.1e-16 | 1 | 71 | 24 | 94 |
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkve.eenlk.snvekeesast 94 vsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ + + +++ +++ + + +++ k ++++++ + + FANhyb_rscf00001667.1.g00001.1 1 VSVPCSSLFDIVTVRCGHCTNLWSVNMAAACQSLSWQDV-QAQHNHN-AQNYRIDsGSSSKgNKKIATRDSIA 71 8*******************************9999985.4444433.3333332022222022223333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.7E-17 | 1 | 72 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
VSVPCSSLFD IVTVRCGHCT NLWSVNMAAA CQSLSWQDVQ AQHNHNAQNY RIDSGSSSKG 60 NKKIATRDSI ADHRATEERV NRREIANFSL SICL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004287301.1 | 7e-52 | PREDICTED: axial regulator YABBY 5 isoform X1 | ||||
Swissprot | Q8GW46 | 4e-22 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A2P6RIV2 | 3e-40 | A0A2P6RIV2_ROSCH; Putative transcription factor C2C2-YABBY family | ||||
STRING | XP_004287301.1 | 3e-51 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-24 | YABBY family protein |
Publications ? help Back to Top | |||
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