PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001641.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 700aa    MW: 79511.7 Da    PI: 6.5161
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001641.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS383.52.4e-1173276983374
                            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                     + L++cA+av++ d++ a++lL++++++++p+gd++qRla+yf+ +L+arla+  +  y+ l + + s    +e l+a+
  FANhyb_rscf00001641.1.g00002.1 327 TMLTQCAQAVANFDQRTASELLKQIRQHSTPHGDATQRLAHYFADGLQARLAGAKTPSYSPLVSVQIS---AAEILKAY 402
                                     689**************************************************999999999999998...9******* PP

                            GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeel 158
                                     ++f  + P+ k+sh+ aN++I++ +e+++r+HiiDf+is+G+QWp+L+q L++Rp+gpp+lRiT+++ p++g   +e++
  FANhyb_rscf00001641.1.g00002.1 403 QVFITAWPFKKMSHFFANRTIMKVAENATRLHIIDFGISYGFQWPCLIQRLSQRPGGPPKLRITAIELPQPGfrPTERV 481
                                     ***********************************************************************9******* PP

                            GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                                     eetg+rL+k+A++++vpfe+nv +a+++e++++e++++++ E ++Vn++++l +++de+v ++s+rd+vLkl++++sP+
  FANhyb_rscf00001641.1.g00002.1 482 EETGRRLEKYAKRFDVPFEYNV-IAQKWETIRIEDIKIDRSELIVVNCMHRLRNIPDETVMVNSPRDAVLKLIRKISPD 559
                                     *********************9.7******************************************************* PP

                            GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekW 315
                                     ++++   +  +n++ Fl+rf eal +y +lfd+lea+++re+ ++r + E+++ gr++vnvvaceg er+ r et+++W
  FANhyb_rscf00001641.1.g00002.1 560 LFIHGVVNGTYNAPFFLTRFREALLHYYTLFDMLEATISREDgQQRFMFEQAIYGRDVVNVVACEGLERVDRPETYRQW 638
                                     ******************************************99*********************************** PP

                            GRAS 316 rerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     ++r  +aGFk++pl++k  k++k++ + +   d +rv+e+ +++++gWk+r+++++S+W+
  FANhyb_rscf00001641.1.g00002.1 639 QARNVRAGFKQLPLDQKLLKKVKTMSKVMRyHDDFRVDEDGHWMLQGWKGRTIMALSFWK 698
                                     *************************998888899*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.555299677IPR005202Transcription factor GRAS
PfamPF035148.4E-115327698IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MDTLHRYSIP EFKYDHGPVS VCPNPNIVNG FKVNHESTNP VLSASRSELS SDSSNEGSEV  60
DGLDINDCNH PVLKYISDIL LEEDLEGKPC MLQDCLALQA AEKSFYDVLV QKDPPLPNQP  120
SSSSVHQSSE SSDDDSPQSF QSSNRSFPVK TDWVWDPAFS PDQSSLFESF SNTLLVSDSI  180
SKMQSLGNFG GVGEASKFLS NAKLEMVDLE RFQLMPQGSV SSESGADGYS FTNGSKGKKT  240
HQREDSNFLE EEERSSKQSA ATGDDFEPQE LFDKVLLCPH KNHESELCAD DESFKTERNG  300
KLQRNKQPKG SKAKRQNNIG EVVDLCTMLT QCAQAVANFD QRTASELLKQ IRQHSTPHGD  360
ATQRLAHYFA DGLQARLAGA KTPSYSPLVS VQISAAEILK AYQVFITAWP FKKMSHFFAN  420
RTIMKVAENA TRLHIIDFGI SYGFQWPCLI QRLSQRPGGP PKLRITAIEL PQPGFRPTER  480
VEETGRRLEK YAKRFDVPFE YNVIAQKWET IRIEDIKIDR SELIVVNCMH RLRNIPDETV  540
MVNSPRDAVL KLIRKISPDL FIHGVVNGTY NAPFFLTRFR EALLHYYTLF DMLEATISRE  600
DGQQRFMFEQ AIYGRDVVNV VACEGLERVD RPETYRQWQA RNVRAGFKQL PLDQKLLKKV  660
KTMSKVMRYH DDFRVDEDGH WMLQGWKGRT IMALSFWKPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-513086992380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461319.10.0PREDICTED: scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2P6QIY90.0A0A2P6QIY9_ROSCH; Putative transcription factor GRAS family
STRINGXP_004295969.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]