PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001616.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 513aa    MW: 56180.4 Da    PI: 5.4076
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001616.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.83.8e-1031245041374
                            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar..svselykalppsetsekn. 73 
                                     lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l +   vs+ +k l  + +++++ 
  FANhyb_rscf00001616.1.g00001.1 124 LVHLLMAAAEALTGANKSrdLARVILVRLKELVSPTDgTNMERLAAYFTEALQGLLEGagGVSHHSKHLIGNGSHRDHg 202
                                     68**********997776669***********9987769*****************99555677777775555555445 PP

                            GRAS  74 ..sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvg 148
                                        ++++aa++l++++sP++kf+h+taNqaIleav +++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT+++
  FANhyb_rscf00001616.1.g00001.1 203 hhPTDVIAAFQLLQDMSPYVKFGHFTANQAILEAVVHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALS 281
                                     6799*************************************************************776556******** PP

                            GRAS 149 spesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225
                                     +  sg  s  +++etg+rL+ fA+++g pf+f+    ++ e++++++L++ +gEal++n++l+l ++  +s ++     
  FANhyb_rscf00001616.1.g00001.1 282 RGGSGrrSIGTVQETGRRLTAFATSIGQPFSFHQCRLDSDETFRPSALKLVKGEALVINCMLNLPHFSYRSPDSIA--- 357
                                     *888898999************************9999*****************************966665555... PP

                            GRAS 226 evLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                                     ++L+  k+l+P++v +ve+e+   +++ F++rf+++l++ysa++dslea++p +s++r+ vEr++lg++i   +a   +
  FANhyb_rscf00001616.1.g00001.1 358 SFLSGAKTLNPRLVALVEEEVRPaGDGGFVARFIDSLYHYSAVYDSLEAGFPMQSRARALVERVFLGPRIAGSLARIYR 436
                                     9********************999******************************************************9 PP

                            GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                                     +     e   +W e+l+++GFkp p+s  + +qaklll  ++ dgyrvee   + lvlgWk+r+L+s+S W+
  FANhyb_rscf00001616.1.g00001.1 437 A---HGEVGCSWWEWLSAVGFKPTPISFANHCQAKLLLGLFN-DGYRVEEVaYHRLVLGWKSRSLLSASIWT 504
                                     9...677788********************************.******86378899**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.33298484IPR005202Transcription factor GRAS
PfamPF035141.3E-100124504IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MTELLMLSSA MELELDDLDV DLSGCSTETT STTNTAISPD QWYDWSPVVD WEALAPIDHL  60
AGGGDFHELF ESMMEGGEMN SPSSELVEET SNSCYTTTSS QSTEVTMLDE GAASNSEDTK  120
GLRLVHLLMA AAEALTGANK SRDLARVILV RLKELVSPTD GTNMERLAAY FTEALQGLLE  180
GAGGVSHHSK HLIGNGSHRD HGHHPTDVIA AFQLLQDMSP YVKFGHFTAN QAILEAVVHD  240
RRVHIVDYDI MEGIQWASLM QALVSRKDGP PTPHLRITAL SRGGSGRRSI GTVQETGRRL  300
TAFATSIGQP FSFHQCRLDS DETFRPSALK LVKGEALVIN CMLNLPHFSY RSPDSIASFL  360
SGAKTLNPRL VALVEEEVRP AGDGGFVARF IDSLYHYSAV YDSLEAGFPM QSRARALVER  420
VFLGPRIAGS LARIYRAHGE VGCSWWEWLS AVGFKPTPIS FANHCQAKLL LGLFNDGYRV  480
EEVAYHRLVL GWKSRSLLSA SIWTSPPESD VAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5411550410379Protein SCARECROW
5b3h_A2e-541155049378Protein SCARECROW
5b3h_D2e-541155049378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024166526.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2P6PX630.0A0A2P6PX63_ROSCH; Putative transcription factor GRAS family
STRINGXP_004292683.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-162GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]