PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001600.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 1127aa    MW: 124549 Da    PI: 6.602
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001600.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.97.1e-22134235199
                                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++
  FANhyb_rscf00001600.1.g00002.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfNMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKR 211
                                     99*****************************9555544.48************************************** PP

                                     --TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  74 LkegDfvvFkldgrsefelvvkvfrk 99 
                                     L +gD v+F   ++++++l+++++r+
  FANhyb_rscf00001600.1.g00002.1 212 LFAGDAVLFI--RDEKQQLLLGIRRA 235
                                     **********..5688889****997 PP
2Auxin_resp118.45.9e-39260343183
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSk 78 
                                     aahaa+++s+F+v+YnPras+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+
  FANhyb_rscf00001600.1.g00002.1 260 AAHAAANNSIFTVFYNPRASPSEFVIPLAKYYKAVCaNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQ 338
                                     79*******************************99779***************************************** PP

                      Auxin_resp  79 WrsLk 83 
                                     Wr+L+
  FANhyb_rscf00001600.1.g00002.1 339 WRNLQ 343
                                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-43123263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-41125249IPR015300DNA-binding pseudobarrel domain
CDDcd100172.73E-18133225No hitNo description
PROSITE profilePS5086311.928134236IPR003340B3 DNA binding domain
SMARTSM010199.5E-22134236IPR003340B3 DNA binding domain
PfamPF023628.6E-20134235IPR003340B3 DNA binding domain
PfamPF065073.8E-34260343IPR010525Auxin response factor
PfamPF023091.9E-610141099IPR033389AUX/IAA domain
PROSITE profilePS5174527.12910141098IPR000270PB1 domain
SuperFamilySSF542777.46E-710271092No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1127 aa     Download sequence    Send to blast
MKQPANGGSA GVPALNSGEG GESVKIINPE LWQACAGPLV NLPPAGTQVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLPS KLLCLLHSVT LHADPETDEV YAQMTLQPVT SFDKEALLRS  120
DLALKSNKPQ PEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFNMQPP AQELVARDLH  180
DTVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDAVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSIF TVFYNPRASP SEFVIPLAKY YKAVCANQLS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERRNRVSI  360
WEIEPVTAPF FICPPPFFRS KRPRQPGMPD DESSDLDNNF KRTMPWLGDD MCMKDPQVLP  420
GLSLVQWMNM QQNSSVASSM QPNYMHPSFS GSVMPNLTGV DLSRQMGLSA PQLPQPNNLQ  480
FNGQRLPQQV QQLDQLPKMQ STTNSLASMV QRQQQMDDMT QVARQNLVNQ SLPSSQAQSP  540
LLQPQSLAQA NSILQQQSST QNQLQRNLPQ NLQQQHQQQQ QHQQQQQHHQ QNVGQNQQQN  600
FIQTPLPDQM NPQLHHLSDN QLQLQLLQKL QQHQQSYLAQ QALQQQPTQL LQLQDQQRQL  660
LDASQSFPRP STPSEMQDMP LSAPISHSQS RAMPQQMTIN NNNQPNGRFS HLQPQSKLQQ  720
QQPGILADMS GHMGLPPTGS TNQLSRAGSG MMAGVAGAGQ SGLTDEGPSC STSPSTNNCP  780
IVVQPLTNNR AHRNSLTGED MAQSANMVMS SSALETMPSN GNLVKGFQHK SEVKPSVNIT  840
RSQSQGMLNP HTYLNGAAAQ TDYLDTSSST TSAGLSQNDV HLQHNNTPLA FNPQSMLFRE  900
PSQEVEAQVD QRNNVSYGSN IDSQLGIPLS SDPLLEKGIV GIGKDFTNNI TSGGMIGNFE  960
NSKDAQQELS SSMVSQSFGV PDMTFQSIDS TINDSSFLDG GAPWAPAAQF QRMRTYTKVY  1020
KRGAVGRSID ITRYSGYDDL KHDLARRFGI EGQLEDRGRV GWKLVYVDHE NDVLLVGDDP  1080
WEEFVNCVRC IKILSPQEVQ QMSLDGDFGG NAVLPNQACS SSDGGNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1671936443388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464700.10.0PREDICTED: auxin response factor 19-like
TrEMBLA0A2P6QS390.0A0A2P6QS39_ROSCH; Auxin response factor
STRINGXP_004301398.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19