PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001586.1.g00003.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

CPP

Protein Properties

Length: 570aa MW: 62944.2 Da PI: 7.7317

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001586.1.g00003.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.3	4e-15	299	336	1	38
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkN 38 ++k+gCnCkkskClkkYCeC++a++ Cs C+C++C+N FANhyb_rscf00001586.1.g00003.1 299 RHKRGCNCKKSKCLKKYCECYQANVGCSAACRCDGCQN 336 589**********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	26.736	214	339	IPR005172	CRC domain
SMART	SM01114	0.018	222	252	IPR033467	Tesmin/TSO1-like CXC domain
SMART	SM01114	2.5E-14	299	340	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.1E-11	301	336	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
EVSQHHRGIR RHLQFETAVA HKNSSFDSHK SLCSLRHDTA NLRSASKRIN LKTLASQINN 60 KAFNSPQGVS CDTSQLSCLY ESVRSGQIGG NSSTFPSICS GIGLHLNSIT QSTSMSSDVF 120 SSRKSTGCLS TPDQMLEHDN LEHESSSSFI SAVPQQNYSC MGDDQQGSQT AVHTTFSFYS 180 TNGLPYLPCD STDQMLVDQD SVPFEEMNAS EGANKIEESN QLSEKRKRQC FAAGVFCLDS 240 CSCENCYNKP EFEDTVFDAR QQIESRNPLA FAPRVVKHDF NSSPKIMEEA DWTTPSSARH 300 KRGCNCKKSK CLKKYCECYQ ANVGCSAACR CDGCQNPCGT MADQEYNRAE KWETHIADKL 360 DTIKGGNDCI KATNMDLYSP SWEGLSVISN FTPLSNPCSS TMVSSASSIM RNCTKNSQAR 420 LQSSRLQPSG TGELKMGRSP VIFTPQIFES KGPYQLSSDG ASYERTDDDI PELLKEPSIP 480 PKVVKGSPNQ KRVSPPQSRA EKLTSRSPKG LRSGRKFILQ AMPSFPPLSP YSDSKAVNDT 540 MNDHEAQPKR HTPSFVRPSK FFTIPLQETP

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

EVSQHHRGIR RHLQFETAVA HKNSSFDSHK SLCSLRHDTA NLRSASKRIN LKTLASQINN  60
KAFNSPQGVS CDTSQLSCLY ESVRSGQIGG NSSTFPSICS GIGLHLNSIT QSTSMSSDVF  120
SSRKSTGCLS TPDQMLEHDN LEHESSSSFI SAVPQQNYSC MGDDQQGSQT AVHTTFSFYS  180
TNGLPYLPCD STDQMLVDQD SVPFEEMNAS EGANKIEESN QLSEKRKRQC FAAGVFCLDS  240
CSCENCYNKP EFEDTVFDAR QQIESRNPLA FAPRVVKHDF NSSPKIMEEA DWTTPSSARH  300
KRGCNCKKSK CLKKYCECYQ ANVGCSAACR CDGCQNPCGT MADQEYNRAE KWETHIADKL  360
DTIKGGNDCI KATNMDLYSP SWEGLSVISN FTPLSNPCSS TMVSSASSIM RNCTKNSQAR  420
LQSSRLQPSG TGELKMGRSP VIFTPQIFES KGPYQLSSDG ASYERTDDDI PELLKEPSIP  480
PKVVKGSPNQ KRVSPPQSRA EKLTSRSPKG LRSGRKFILQ AMPSFPPLSP YSDSKAVNDT  540
MNDHEAQPKR HTPSFVRPSK FFTIPLQETP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-11	251	336	48	120	Protein lin-54 homolog
5fd3_B	1e-11	251	336	48	120	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011466742.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBL	A0A2P6RWF0	0.0	A0A2P6RWF0_ROSCH; Putative transcription factor Tesmin family
STRING	XP_004305318.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14277	14	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	2e-49	Tesmin/TSO1-like CXC domain-containing protein