PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001546.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C3H | ||||||||
Protein Properties | Length: 259aa MW: 28408.4 Da PI: 7.6219 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.9 | 2.3e-10 | 93 | 117 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ FANhyb_rscf00001546.1.g00001.1 93 FKTKLCCKFRA-GTCPYVTNCNFAHS 117 69*********.*************8 PP | |||||||
2 | zf-CCCH | 19.2 | 2.2e-06 | 166 | 191 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ FANhyb_rscf00001546.1.g00001.1 166 YKGRHCKKFYTEEGCPYGDNCTFLHD 191 78888********************7 PP | |||||||
3 | zf-CCCH | 44.1 | 3.5e-14 | 228 | 253 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg FANhyb_rscf00001546.1.g00001.1 228 WKTRICNKWELTGYCPFGSKCHFAHG 253 8************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.77E-8 | 90 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-14 | 90 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.003 | 92 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.131 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-7 | 93 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.2E-10 | 163 | 193 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-8 | 164 | 193 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.058 | 165 | 192 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.183 | 165 | 193 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-15 | 224 | 254 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-9 | 225 | 253 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-9 | 227 | 254 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 227 | 255 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-11 | 228 | 253 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSYGGRETNV VQVITGNGGG GDMWSGDQAV WATEDEYQVW NNGDAMGDTM SNSNYDQRQS 60 QSRSGSEPPN KKSRNTPDVT SSNRSKAIGK MFFKTKLCCK FRAGTCPYVT NCNFAHSIEE 120 LRRPPPNWQE IVAAHEEEKA VSSEPREEFQ IPIVTTGYGV ETQRSYKGRH CKKFYTEEGC 180 PYGDNCTFLH DESSKNRESV AISLGPGGYG GAAAAAAAGG ANNKPSNWKT RICNKWELTG 240 YCPFGSKCHF AHGVAGMCY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300410.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q9LQM3 | 2e-92 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A2P6PA58 | 1e-170 | A0A2P6PA58_ROSCH; Putative transcription factor C3H family | ||||
STRING | XP_004300410.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7751 | 33 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 2e-93 | C3H family protein |