PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001544.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 231aa    MW: 26546.2 Da    PI: 8.5936
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001544.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-1895149256
                                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     rk+ ++tkeq++ Le+ F+++++++ +++  LA+ l+L+ rqV vWFqNrRa+ k
  FANhyb_rscf00001544.1.g00001.1  95 RKKLRLTKEQTTLLEDSFKRHSTLNPNQKHALAELLNLKPRQVEVWFQNRRARTK 149
                                     78889************************************************98 PP
2HD-ZIP_I/II118.73.2e-3895182188
                     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 
                                     +kk+rl+keq +lLE+sF+++++L+p++K++la+ L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en++
  FANhyb_rscf00001544.1.g00001.1  95 RKKLRLTKEQTTLLEDSFKRHSTLNPNQKHALAELLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKWCESLNAENRK 173
                                     69***************************************************************************** PP

                     HD-ZIP_I/II  80 LekeveeLr 88 
                                     L+ke +eL+
  FANhyb_rscf00001544.1.g00001.1 174 LKKELQELK 182
                                     *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-1984152IPR009057Homeodomain-like
PROSITE profilePS5007117.10391151IPR001356Homeobox domain
SMARTSM003891.2E-1593155IPR001356Homeobox domain
PfamPF000461.2E-1595149IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.3E-1895154IPR009057Homeodomain-like
CDDcd000861.15E-1395152No hitNo description
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
SMARTSM003401.1E-15151196IPR003106Leucine zipper, homeobox-associated
PfamPF021831.9E-9151182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MADYDPEACN TRLQLGLGLG GYAPRQEMRN SKDRPLVCFD LSFTLLPKPE KIANLDHHME  60
NRSSLTMNII DEEDEDRRST DRADSEITNF KDGARKKLRL TKEQTTLLED SFKRHSTLNP  120
NQKHALAELL NLKPRQVEVW FQNRRARTKL KQTEVDCEFL KKWCESLNAE NRKLKKELQE  180
LKLLSVNGAS SPLLTHQIPK TTMLTMCSSC ERKAKANEQY PNNEAAAAAM N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143151RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299785.11e-169PREDICTED: homeobox-leucine zipper protein HAT14-like
SwissprotP466655e-51HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2P6QSD01e-141A0A2P6QSD0_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004299785.11e-169(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-43HD-ZIP family protein