PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001521.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 284aa    MW: 31678.4 Da    PI: 8.8565
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001521.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-18554154
                             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                                    ++++GVr+++ +g+Wv+eIr+p        +r++lg+f +aeeAa+a+++a+  + 
  FANhyb_rscf00001521.1.g00002.1  5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFESAEEAARAYDEAAILMS 54
                                    59*******9.**********8.....334*********************98776 PP
2AP258.51.6e-1888137154
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                                     ++++GVr+++ +g+Wv+eIr+p        +r++lg+f +aeeAa+a+++a+  + 
  FANhyb_rscf00001521.1.g00002.1  88 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFESAEEAARAYDEAAILMS 137
                                     59*******9.**********8.....334*********************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.36E-31565No hitNo description
PROSITE profilePS5103221.773663IPR001471AP2/ERF domain
PfamPF008471.2E-11653IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-20664IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.9E-32664IPR001471AP2/ERF domain
SMARTSM003801.2E-38669IPR001471AP2/ERF domain
PRINTSPR003677.7E-10718IPR001471AP2/ERF domain
PRINTSPR003677.7E-102945IPR001471AP2/ERF domain
CDDcd000182.29E-3188148No hitNo description
PfamPF008471.1E-1189136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-3289147IPR001471AP2/ERF domain
PROSITE profilePS5103221.74689146IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-2089147IPR016177DNA-binding domain
SMARTSM003804.0E-3989152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MVQSKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFESAE EAARAYDEAA ILMSGRNAKI  60
NFPVTTTETE AANNININSN SSSSTSSKKF RGVRQRHWGS WVSEIRHPLL KRRVWLGTFE  120
SAEEAARAYD EAAILMSGRN AKTNFPVTTS EIAASSKDPA INNNSNSSSS TSNSLSAILS  180
AKLRKCCKSP SPSLTCLRLD TENSHIGVWQ KRPGPRSDSN WLMMVELGQK TAGLKEEKEE  240
STSTSATEVS DGHEMEGLLD SGDDRLHEEE KIALQMIEEL LNRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-155147161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467093.11e-123PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI332e-74WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A3Q8TD671e-127A0A3Q8TD67_FRAAN; Transcription factor ERF35
STRINGXP_008243869.11e-90(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.12e-61ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]