PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001315.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bZIP

Protein Properties

Length: 302aa MW: 34038.1 Da PI: 9.848

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001315.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.8e-10	164	207	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L + FANhyb_rscf00001315.1.g00001.1 164 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 207 8999********************************98877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.8E-14	160	224	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.622	162	214	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.7E-9	164	208	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.4E-13	164	215	No hit	No description
SuperFamily	SSF57959	3.62E-11	164	218	No hit	No description
CDD	cd14703	5.40E-23	165	215	No hit	No description
PROSITE pattern	PS00036	0	167	182	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MAHLPPKVPN MTPNWPDLSH HHKMSSCFAA PNGNAGSNPC WVDEFLDFSS ARRGSHRRSV 60 SDSITFLEAP MQDECRASGA PPEPNTTRHV EFDRFDDEQF MSMFTTDEIA AAAAAGPTGR 120 ARTLRRRRIT TALTTTSSSR LMMGQQNQNG DNKNTTGDRK IDPKRVKRIL ANRQSAQRSR 180 VRKLQYISEL ERSVTSLQAE VSVLSPRVAF LDHQRLLLNV DNSALKQRIA ALAQDKIFKD 240 AHQEALKREI ERLRQVYHQQ NLKKMEDNNN NIEQSPNSDT ITTQHPDAAA ADQKEQLLNV 300 SS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269\|PubMed:17719007, ECO:0000269\|PubMed:19449183}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004303124.1	0.0	PREDICTED: basic leucine zipper 34
Refseq	XP_011466942.1	0.0	PREDICTED: basic leucine zipper 34
Swissprot	F4IN23	3e-97	BZP34_ARATH; Basic leucine zipper 34
TrEMBL	A0A2P6RUF6	1e-165	A0A2P6RUF6_ROSCH; Putative transcription factor bZIP family
STRING	XP_004303124.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2011	34	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	2e-70	bZIP family protein

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]