PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001234.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 340aa    MW: 37203.5 Da    PI: 4.3717
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001234.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.39.4e-143176449
                                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                    e    r+vtfskR+ g++ KA  LS L++ e+a +++s+ g+++ +
  FANhyb_rscf00001234.1.g00003.1 31 EAPDHRHVTFSKRKRGLFQKAGQLSSLTGSEIAAVVVSECGRVFGF 76
                                    55668************************************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.2592080IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-202079IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.15E-192197IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-132242IPR002100Transcription factor, MADS-box
PfamPF003193.6E-153076IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-134257IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-135778IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAPVIAKSTS NSVGTKKKTL GRRKVEMKKV EAPDHRHVTF SKRKRGLFQK AGQLSSLTGS  60
EIAAVVVSEC GRVFGFGTPS CDAVADRYLA CLSPNQNGND QNHGISFRDG IGSIIVESTP  120
STSSSYYSQN DNVHYQENGA VVGPMIAETI PSKGSPIRVL EDNILDNRNL DLAPNGNAHY  180
QNNNAVVESM IVEITPFCSN FPQSDGVVIG SKIDETTPLS SSCSEFLEGD GYLNLMNDTV  240
SPAEPCPYQE GFDGSEAGEM SEEMIEEMIE EMMNEKVDEV PRCNEFLTNL VRALLPTTTS  300
SYYTSLLVME DQDELIMDNR GLGSCYFNPY EDWRCGGISH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A1e-13584480PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B1e-13584480PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468587.10.0PREDICTED: myocyte-specific enhancer factor 2C-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF984733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65360.13e-19AGAMOUS-like 23