PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001230.1.g00003.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 550aa MW: 59550.9 Da PI: 6.8006

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001230.1.g00003.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.1e-09	361	408	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq FANhyb_rscf00001230.1.g00003.1 361 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 408 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-17	355	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.24E-11	355	412	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.6E-17	357	425	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	357	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.4E-6	361	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	363	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MEKDNNSGTP SWNPSSLMHS NELNCAPHQL PNSYFNANWD NSMDQSDPFE SALSSMVSSP 60 AASNAVGATA FPGEGGGDMI RELIGRLGSI CNSGDISSLS YNNSTNNSCY STPLNSSPPT 120 KLNLSMVDPH MRGNFPIPAP SSHPSLAPFS ADPGFVERAA RFSSFGNHGG LNGQFNLNEA 180 ELAYRSMLKL DSGKLSRAAS NQSLRSQMGA VQESIKSSSP QDGNSFPDKK VSRFSRSTTP 240 DNGELGDSRE GSSVSEQIPT GDLSVKAENV SNSRKRKAVP KGKAKETSSS PSVKNGKAVT 300 EEQPNSKRSK TDEASGNEKE TQKSNKESNG GGKTTKDKPE VVEPPKDYIH VRARRGQATD 360 SHSLAERVRR EKISERMKFL QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT 420 VNPRMDLNME ALLSKEILQS QGALQNALYQ LDSAVPASFP FGYQPQQLPP LHSNSISNET 480 DTHFPVNLNA ALTQNSTMQS PAFDRFGGAN PQAPQFFEDD LQSMVQMGFG QIEQHSLHGS 540 VASAQMKVEH

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MEKDNNSGTP SWNPSSLMHS NELNCAPHQL PNSYFNANWD NSMDQSDPFE SALSSMVSSP  60
AASNAVGATA FPGEGGGDMI RELIGRLGSI CNSGDISSLS YNNSTNNSCY STPLNSSPPT  120
KLNLSMVDPH MRGNFPIPAP SSHPSLAPFS ADPGFVERAA RFSSFGNHGG LNGQFNLNEA  180
ELAYRSMLKL DSGKLSRAAS NQSLRSQMGA VQESIKSSSP QDGNSFPDKK VSRFSRSTTP  240
DNGELGDSRE GSSVSEQIPT GDLSVKAENV SNSRKRKAVP KGKAKETSSS PSVKNGKAVT  300
EEQPNSKRSK TDEASGNEKE TQKSNKESNG GGKTTKDKPE VVEPPKDYIH VRARRGQATD  360
SHSLAERVRR EKISERMKFL QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT  420
VNPRMDLNME ALLSKEILQS QGALQNALYQ LDSAVPASFP FGYQPQQLPP LHSNSISNET  480
DTHFPVNLNA ALTQNSTMQS PAFDRFGGAN PQAPQFFEDD LQSMVQMGFG QIEQHSLHGS  540
VASAQMKVEH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004296985.1	0.0	PREDICTED: transcription factor bHLH77-like
TrEMBL	A0A2P6QVQ9	0.0	A0A2P6QVQ9_ROSCH; Putative transcription factor bHLH family
STRING	XP_004296985.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2530	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48560.1	1e-73	bHLH family protein