PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001221.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 1097aa MW: 126340 Da PI: 8.2422

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001221.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.2	2e-21	11	94	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 ++Yn YAke+GF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+l++++ ++++w++ ++ FANhyb_rscf00001221.1.g00004.1 11 NYYNCYAKELGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMLRMRLVDSKRWRILEV 86 69***************************************9988.....99*********************** PP FAR1 82 eleHnHel 89 leHnH l FANhyb_rscf00001221.1.g00004.1 87 ALEHNHLL 94 ****87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-18	11	94	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.3E-28	211	299	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.916	498	534	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	0.0035	508	530	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.4E-6	509	536	IPR006564	Zinc finger, PMZ-type
Pfam	PF10551	1.0E-27	688	776	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.916	975	1011	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	0.0035	985	1007	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.4E-6	986	1013	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1097 aa Download sequence Send to blast
MEFESYEDAY NYYNCYAKEL GFRVRVKNSW FKRNSKEKYG AVLCCSSQGF KRIKDVNRLR 60 KETRTGCPAM LRMRLVDSKR WRILEVALEH NHLLGTKMYK SMKKMTSGTK RKSQSSSDAE 120 NQTIKLYRAL VIDSGGNGPS NFNATEARND SPNQLNLKKG DTQAIYNYLC RMQLTNPNFF 180 YLMDINDDGH LRNVFWIDAR SRAACGYFGD VIYFDNTYLA NKFEIPLVAL VGINHHGQAV 240 LLGCALLAGE TAESYIWLFK AWLTCVSGRS PQTIITDRCN VVQSAIAEVF PSCHHCFGLS 300 LIIKKVPEKL GGSRNYDAIR KALLKAVYET LKVIEFEAAW GYMIHRFGIG DHEWLQSLYD 360 DRFRWAPVYL KDTSFSGMSA TRPGETLSPF FDKYVHKQTP LKEFLDKYEL ALQKKHKEEA 420 LADIDSRSSS PMLKTRCSFE LQLSKIYTRD IFKKFQFEVE EMYSCFSTTQ LHIDGPIIIF 480 LVKERVVADG NQREIRDYEV LYNRTAGEVR CICSCFNFHG YLCRHALCVL NFNGVEEIPS 540 KYILARWKKD YKRLYIPDHG SNNVDGTDRM QWFGQLYRSA LQIVEEGVIS LDHYNVAVQT 600 FEESLKRVHE IEEKHNPENF FDLKRKSEKD GGKTLPEAHR APAPVTGGRI PVAGLRTPAV 660 GIRSPVTGIF QLPENCRSRE ACGYFGDVIY FDNTYLANKF EIPLVALVGI NHHGQAVLLG 720 CALLAGETAE SYIWLFKAWL TCVSGHSPQT IITDRCNVVQ SAIAEVFPSC HHCFGLSLII 780 KKVPEKLGGS RNYDAIRKAL LKAVYETLKV IEFEAAWGYM IHRFGIGDHE WLQSLYDNRF 840 RWAPVYLKDT SFSGMSATRP GETLSPFFDK YVHKQTPLKE FLDKYELALQ KKHKEEALAD 900 IDSRSSSPML KTRCSFELQL SKIYTRDIFK KFQFEVEEMY SCFSTTQLHI DGPIIIFLVK 960 ERVVADGNQR EIRDYEVLYN RTAGEVRCIC SCFNFHGYLC RHALCVLNFN GVEEIPSKYI 1020 LARWKKDYKR LYIPDHGSNN VDGTDRMQWF GQLYRSALQI VEEGVISLDH YNVAVQTFEE 1080 SLKRVHEIEE KHNPENL

Sequence ? help Back to Top

Protein Sequence Length: 1097 aa Download sequence Send to blast

MEFESYEDAY NYYNCYAKEL GFRVRVKNSW FKRNSKEKYG AVLCCSSQGF KRIKDVNRLR  60
KETRTGCPAM LRMRLVDSKR WRILEVALEH NHLLGTKMYK SMKKMTSGTK RKSQSSSDAE  120
NQTIKLYRAL VIDSGGNGPS NFNATEARND SPNQLNLKKG DTQAIYNYLC RMQLTNPNFF  180
YLMDINDDGH LRNVFWIDAR SRAACGYFGD VIYFDNTYLA NKFEIPLVAL VGINHHGQAV  240
LLGCALLAGE TAESYIWLFK AWLTCVSGRS PQTIITDRCN VVQSAIAEVF PSCHHCFGLS  300
LIIKKVPEKL GGSRNYDAIR KALLKAVYET LKVIEFEAAW GYMIHRFGIG DHEWLQSLYD  360
DRFRWAPVYL KDTSFSGMSA TRPGETLSPF FDKYVHKQTP LKEFLDKYEL ALQKKHKEEA  420
LADIDSRSSS PMLKTRCSFE LQLSKIYTRD IFKKFQFEVE EMYSCFSTTQ LHIDGPIIIF  480
LVKERVVADG NQREIRDYEV LYNRTAGEVR CICSCFNFHG YLCRHALCVL NFNGVEEIPS  540
KYILARWKKD YKRLYIPDHG SNNVDGTDRM QWFGQLYRSA LQIVEEGVIS LDHYNVAVQT  600
FEESLKRVHE IEEKHNPENF FDLKRKSEKD GGKTLPEAHR APAPVTGGRI PVAGLRTPAV  660
GIRSPVTGIF QLPENCRSRE ACGYFGDVIY FDNTYLANKF EIPLVALVGI NHHGQAVLLG  720
CALLAGETAE SYIWLFKAWL TCVSGHSPQT IITDRCNVVQ SAIAEVFPSC HHCFGLSLII  780
KKVPEKLGGS RNYDAIRKAL LKAVYETLKV IEFEAAWGYM IHRFGIGDHE WLQSLYDNRF  840
RWAPVYLKDT SFSGMSATRP GETLSPFFDK YVHKQTPLKE FLDKYELALQ KKHKEEALAD  900
IDSRSSSPML KTRCSFELQL SKIYTRDIFK KFQFEVEEMY SCFSTTQLHI DGPIIIFLVK  960
ERVVADGNQR EIRDYEVLYN RTAGEVRCIC SCFNFHGYLC RHALCVLNFN GVEEIPSKYI  1020
LARWKKDYKR LYIPDHGSNN VDGTDRMQWF GQLYRSALQI VEEGVISLDH YNVAVQTFEE  1080
SLKRVHEIEE KHNPENL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011467068.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_011467069.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2P6RVY7	0.0	A0A2P6RVY7_ROSCH; Putative transcription factor FAR family
STRING	XP_004305499.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]