PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001205.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HD-ZIP

Protein Properties

Length: 828aa MW: 92275.5 Da PI: 6.1419

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001205.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.8e-21	89	144	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e+lF+++++p+ ++r++L+ lgL+ rqVk+WFqNrR+++k FANhyb_rscf00001205.1.g00002.1 89 KKRYHRHTAHQIQEMENLFKECPHPDDKQRQKLSLDLGLKPRQVKFWFQNRRTQMK 144 688999***********************************************998 PP
2	START	162.3	3.5e-51	318	542	3	206
HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCC CS START 3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveelldd 68 a + ++elvk+ +a+ep+W+k s eng+e l +e+++ ++ea r+++vv+m++ +lv +ld FANhyb_rscf00001205.1.g00002.1 318 AASSLEELVKMCTAGEPLWMKNS--ENGMEMLNAEERARLfpwpmnfkqnssdLRTEATRDTAVVIMNSINLVDAFLDA 394 678899***************..99999999999988899999******************************** PP GGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS CS START 69 keqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqk 135 + +W e ++ ka+t++vis + g lqlm+aelq+ splvp R+ f+Ry+ q +++g+w+ivd +ds FANhyb_rscf00001205.1.g00002.1 395 N-KWMELFPsivsKAKTVQVISADpsgqanGSLQLMYAELQVVSPLVPtRETHFLRYCHQnEEEGSWAIVDFPIDSFHG 472 .**********************************************************************9999 PP --.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 136 ppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++s+ R ++ pSg+li++++ng+s+vtwveh++ +++ +h+++ + sgla+ga +w+a lqrqce+ FANhyb_rscf00001205.1.g00002.1 473 SF-QPSFPRYKRWPSGCLIQDMPNGYSRVTWVEHAEIEEKPVHQIFSHYAYSGLAFGAHRWLAVLQRQCER 542 87.9***************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-20	68	144	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.98E-19	80	144	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.487	86	146	IPR001356	Homeobox domain
SMART	SM00389	6.9E-19	87	150	IPR001356	Homeobox domain
CDD	cd00086	2.45E-18	89	144	No hit	No description
Pfam	PF00046	1.7E-18	89	144	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	121	144	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	44.647	307	545	IPR002913	START domain
SuperFamily	SSF55961	1.37E-31	308	544	No hit	No description
CDD	cd08875	1.18E-116	311	541	No hit	No description
SMART	SM00234	1.0E-35	316	542	IPR002913	START domain
Pfam	PF01852	3.2E-43	318	542	IPR002913	START domain
SuperFamily	SSF55961	7.97E-15	560	794	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 828 aa Download sequence Send to blast
MYGDCQVMST MGGGNVVNSE TLFSSPIQNP NFNFMPFQPF SSIVPKEEDV HMIRGKEEMM 60 DSGSGSEHAE EKYSEQETEE QQQQQPPKKK RYHRHTAHQI QEMENLFKEC PHPDDKQRQK 120 LSLDLGLKPR QVKFWFQNRR TQMKSVFHHM IHIYVCMRNK SLAANFIYVK AQQDRADNVM 180 LRAENDDLKN ENYRLQAALR NLICPNCGGA AIIGDIAIDE HQLRLENARL REELERVCCL 240 SGYPGGRQLQ MMGPAAPLMA ASLDLDMNIY SRHFTDPMMS SCTDHHMIPM SILPPEPSHF 300 PEGGLLLDDE KSLAMKLAAS SLEELVKMCT AGEPLWMKNS ENGMEMLNAE ERARLFPWPM 360 NFKQNSSDLR TEATRDTAVV IMNSINLVDA FLDANKWMEL FPSIVSKAKT VQVISADPSG 420 QANGSLQLMY AELQVVSPLV PTRETHFLRY CHQNEEEGSW AIVDFPIDSF HGSFQPSFPR 480 YKRWPSGCLI QDMPNGYSRV TWVEHAEIEE KPVHQIFSHY AYSGLAFGAH RWLAVLQRQC 540 ERVASLMARN ISDLGVIPSP EARRNLMRLA QRMIRTFSVN MSTSGGQAWT ALSDSPDDTI 600 RITTRKVSEA GQPNGVILSA VSTTWLPYSH YRVFELLRDE RRRAQLDVFS NGTSLQEVAH 660 IANGSHPGNC ISVLRVNVAS NSTQNIELML QESCTDQSGS LVVYATMDVN DIQLAMSGED 720 PSCIPLLPLG FAIVPVESPN KSTTTTSPSD QYSRNSGCLM TVGLQVVASP NPSAKLNLST 780 VTAINNHLCN SVQQIISALG NTTTATDNGN SVGGGGGSCS EPTAASSK

Sequence ? help Back to Top

Protein Sequence Length: 828 aa Download sequence Send to blast

MYGDCQVMST MGGGNVVNSE TLFSSPIQNP NFNFMPFQPF SSIVPKEEDV HMIRGKEEMM  60
DSGSGSEHAE EKYSEQETEE QQQQQPPKKK RYHRHTAHQI QEMENLFKEC PHPDDKQRQK  120
LSLDLGLKPR QVKFWFQNRR TQMKSVFHHM IHIYVCMRNK SLAANFIYVK AQQDRADNVM  180
LRAENDDLKN ENYRLQAALR NLICPNCGGA AIIGDIAIDE HQLRLENARL REELERVCCL  240
SGYPGGRQLQ MMGPAAPLMA ASLDLDMNIY SRHFTDPMMS SCTDHHMIPM SILPPEPSHF  300
PEGGLLLDDE KSLAMKLAAS SLEELVKMCT AGEPLWMKNS ENGMEMLNAE ERARLFPWPM  360
NFKQNSSDLR TEATRDTAVV IMNSINLVDA FLDANKWMEL FPSIVSKAKT VQVISADPSG  420
QANGSLQLMY AELQVVSPLV PTRETHFLRY CHQNEEEGSW AIVDFPIDSF HGSFQPSFPR  480
YKRWPSGCLI QDMPNGYSRV TWVEHAEIEE KPVHQIFSHY AYSGLAFGAH RWLAVLQRQC  540
ERVASLMARN ISDLGVIPSP EARRNLMRLA QRMIRTFSVN MSTSGGQAWT ALSDSPDDTI  600
RITTRKVSEA GQPNGVILSA VSTTWLPYSH YRVFELLRDE RRRAQLDVFS NGTSLQEVAH  660
IANGSHPGNC ISVLRVNVAS NSTQNIELML QESCTDQSGS LVVYATMDVN DIQLAMSGED  720
PSCIPLLPLG FAIVPVESPN KSTTTTSPSD QYSRNSGCLM TVGLQVVASP NPSAKLNLST  780
VTAINNHLCN SVQQIISALG NTTTATDNGN SVGGGGGSCS EPTAASSK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004300207.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5
Refseq	XP_011465124.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5
Refseq	XP_011465125.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5
Refseq	XP_011465126.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	A0A2P6PAJ2	0.0	A0A2P6PAJ2_ROSCH; Putative transcription factor & lipid binding Homobox-WOX family
STRING	XP_004300207.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10946	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]